Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq298 149 8e-31 seq653 109 7e-19 >seq298 Length=101239 Score = 149 bits (164), Expect = 8e-31 Identities = 448/686 (65%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 |||||||| | | ||| || |||| | || |||| ||||| ||||||||||| ||| Sbjct 55746 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 55805 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 ||||| || | || ||||| | || | ||||| || || ||||| |||| Sbjct 55806 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 55865 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||| | ||||| || || | ||| ||||| | | ||||| Sbjct 55866 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 55925 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || || || || | || | ||||||||| || | || | || ||| || Sbjct 55926 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 55985 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | | |||||| || | || ||||| || | ||| ||| ||| ||| |||||| | Sbjct 55986 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 56045 Query 63483 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 63539 | ||| ||||| || || || ||||| || || || | ||||| ||| || | Sbjct 56046 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 56102 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 ||||| ||||| || || ||| || || |||| | | || || || ||||| | Sbjct 56103 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 56162 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| || || || || || || | || || || || || || ||| || Sbjct 56163 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 56222 Query 63660 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 63713 || | | ||||||||||| ||| ||| | || | |||| ||| || Sbjct 56223 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 56276 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 || ||||||||||| | |||||| || || || || | |||||| | || || | Sbjct 56277 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 56336 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833 | ||| || | ||||| || || || || || || | ||| ||||| || ||||| Sbjct 56337 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 56396 Query 63834 ATAATAACCGAGTTGAGTTTATCCTT 63859 | ||| |||||| ||| | ||||| Sbjct 56397 ACAATCGCCGAGTCGAGCTCCTCCTT 56422 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 61985 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 |||| |||| |||||| || ||||| || | || | || ||||| || |||||||||| Sbjct 54538 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 54597 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || ||||| || |||| || || ||||| || || | ||| ||| Sbjct 54598 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 54657 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 ||||| || || || || | |||||| || ||||||||||| || | ||| |||| Sbjct 54658 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 54717 Query 62164 CCATTTTTATGA 62175 |||| | || || Sbjct 54718 CCATCTGTACGA 54729 >seq653 Length=48578 Score = 109 bits (120), Expect = 7e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || |||||| |||||| || ||||| | | || ||||| ||||| || || || Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || |||||||| ||||| || || | || || |||||| Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || || || || ||||| ||||| | ||| | || | || || | ||| | Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 5949 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| | ||||| ||||||||||| Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932739838120