Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq298 149 8e-31
seq653 109 7e-19
>seq298
Length=101239
Score = 149 bits (164), Expect = 8e-31
Identities = 448/686 (65%), Gaps = 18/686 (3%)
Strand=Plus/Plus
Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242
|||||||| | | ||| || |||| | || |||| ||||| ||||||||||| |||
Sbjct 55746 GGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATC 55805
Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302
||||| || | || ||||| | || | ||||| || || ||||| ||||
Sbjct 55806 CAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGA 55865
Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362
||||||||| | | | ||| | ||||| || || | ||| ||||| | | |||||
Sbjct 55866 TCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGT 55925
Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422
|| ||||| || || || || | || | ||||||||| || | || | || ||| ||
Sbjct 55926 CGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGG 55985
Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482
| | |||||| || | || ||||| || | ||| ||| ||| ||| |||||| |
Sbjct 55986 ACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGA 56045
Query 63483 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAAC 63539
| ||| ||||| || || || ||||| || || || | ||||| ||| || |
Sbjct 56046 TGGACGTTG--AGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGTCTTGAGG 56102
Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599
||||| ||||| || || ||| || || |||| | | || || || ||||| |
Sbjct 56103 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGT 56162
Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659
||| || || || || || || | || || || || || || ||| ||
Sbjct 56163 TGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTC 56222
Query 63660 GAAAGTAGATTGTACGTCTCAATA----GCTGA--GTCTATATCCCATTGATGAATTCCT 63713
|| | | ||||||||||| ||| ||| | || | |||| ||| ||
Sbjct 56223 GACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------AATGCCA 56276
Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773
|| ||||||||||| | |||||| || || || || | |||||| | || || |
Sbjct 56277 ACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGG 56336
Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833
| ||| || | ||||| || || || || || || | ||| ||||| || |||||
Sbjct 56337 AGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAG 56396
Query 63834 ATAATAACCGAGTTGAGTTTATCCTT 63859
| ||| |||||| ||| | |||||
Sbjct 56397 ACAATCGCCGAGTCGAGCTCCTCCTT 56422
Score = 82.4 bits (90), Expect = 1e-10
Identities = 134/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 61985 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043
|||| |||| |||||| || ||||| || | || | || ||||| || ||||||||||
Sbjct 54538 CTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTC 54597
Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103
| || || ||||| || |||| || || ||||| || || | ||| |||
Sbjct 54598 CAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCG 54657
Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163
||||| || || || || | |||||| || ||||||||||| || | ||| ||||
Sbjct 54658 GATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAG 54717
Query 62164 CCATTTTTATGA 62175
|||| | || ||
Sbjct 54718 CCATCTGTACGA 54729
>seq653
Length=48578
Score = 109 bits (120), Expect = 7e-19
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || |||||| |||||| || ||||| | | || ||||| ||||| || || ||
Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || |||||||| || |||||||| ||||| || || | || || ||||||
Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480
|| || || || ||||| ||||| | ||| | || | || || | ||| |
Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 5949
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
|||||||| | ||||| |||||||||||
Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622932739838120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |