Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq298 307 3e-78 seq653 95.1 3e-14 >seq298 Length=101239 Score = 307 bits (340), Expect = 3e-78 Identities = 1063/1634 (65%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| |||| || ||| ||| || || || | | | | || ||||||| Sbjct 56212 TTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCG 56153 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||||| || |||| ||||| || |||| Sbjct 56152 TGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACG 56093 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | |||||||||| || || || || ||| | | || |||| ||||| | Sbjct 56092 TGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAACG-TCCATCGCATTCGTTC 56034 Query 363726 -ACAGAACAGTTACATTCGCGG-CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||| ||||| ||| ||| ||| || || | || || ||||| Sbjct 56033 CACTGG-CTCCTACAT-CGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTG 55976 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| || || | || |||||||| || || ||||| || || Sbjct 55975 CGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAACAAGCGACCTGGTGCC 55916 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || || || || ||||| || |||||| | || ||||| || || || || || Sbjct 55915 TTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAG 55856 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || ||||| | ||||| || ||||| ||| || |||||| | |||| Sbjct 55855 AACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGAT 55796 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || |||||| | || ||| | | | | | ||| | ||| | || || |||| | Sbjct 55795 CTCTTCATGAAGAGAGTCGAG--AAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGT 55738 Query 364022 GTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 | | || || |||| ||| | || || || | || || | ||||| ||||| || Sbjct 55737 GCTCCGGCCTCGCCGACTGT-TACGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAG 55679 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| |||| ||| ||||| || || |||||||| |||| |||||| | || Sbjct 55678 CGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAG 55619 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 |||||| ||||| || | |||| ||| ||||||| || | |||||||||| | Sbjct 55618 GCGCAGACGGAGACGGGCAACCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGC 55559 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| ||||| || | |||| | ||||| || || || || || || || Sbjct 55558 AACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTTTGCACTGAAATCATCGAGTA 55500 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | | || || || ||| |||||| || ||||| || || | || || || | || || Sbjct 55499 CTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGT 55440 Query 364320 A------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 || || || || | |||| |||| | | | || || ||| | || Sbjct 55439 TGACTACAACGAAGGCACCTATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGT 55380 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433 |||| | ||| | | || ||| || | || || ||| || ||| ||| Sbjct 55379 CCGCAACTTGAACAGGATCATTGACGTCAACCACTACCCTGTTCAGGAGGCC---CGTAA 55323 Query 364434 TA---ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA--CGTTT-T 364487 | | ||||| |||||||| || ||||| || || |||||||| ||||| |||| | Sbjct 55322 CAGCAACATGCGCCATCGCCCCATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCT 55263 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||| || || | || || || |||| ||||| | || || ||| ||||||| Sbjct 55262 TGCCCTGCGCA---TGCCCTTCGAGTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTT 55206 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607 || || || || ||||| | || || || | ||||| | | || | Sbjct 55205 CGAGACCATCTACCACGCCGCCCTCACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCAC 55146 Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 ||||| | || || || |||||| |||| |||| | |||||| || | ||| | Sbjct 55145 CTACTCCTCGTACGAAGGCTCCCCTGTTTCCAAGGGGATTCTCCAGTACGACATGTGGGA 55086 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCAT 364725 |||| ||| |||| || ||| ||||||| | | | | | | | ||| |||| Sbjct 55085 CGTCAAGCCCTCTGACCTCTGGGACTGGGACTCTTTGAAAGAGCAGA--TCAAGCAGCAC 55028 Query 364726 GGTACTCGCAAC--TCC-CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||||| || |||||| || ||||||||||| || ||| | ||||| Sbjct 55027 GGCGTCCGCAACAGTCTGCTCGTT---GCCCCCATGCCCACTGCAAGCACTTCGCAGATT 54971 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || |||||||||||||||||||| | || ||| | || ||||| ||||| Sbjct 54970 CTGGGCAACAACGAGTGCTTCGAACCTTACACCTCCAACATCTACCAGCGCCGCGTTCTC 54911 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || || || | ||| || ||| | || ||||||| ||| ||| || ||| Sbjct 54910 GCTGGCGAGTTCCAGGTCGTCAATCCCTGGCTTCTCAAGGACCTTGTCGAGATGGGACTG 54851 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| ||||||||||| ||||| || | ||||| || | || ||||| || Sbjct 54850 TGGTCCGACGGCATGAAGAACCGCATCATTGCTGAGAATGGCTCCATTCAAAACATCCCC 54791 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| | | ||||| || || ||||| |||||| ||| || Sbjct 54790 AACATCCCTGCCGAGGTCAAGGCCTTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACC 54731 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 || | | ||||| ||||| || || || || ||| ||| || || | ||| | Sbjct 54730 GTCGTACAGATGGCTGCCGACCGTGGCGCCTTCATCGACCAGTCTCAATCCCTCAACATT 54671 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || ||| | |||| | || |||||| ||| || ||||| Sbjct 54670 CACATGAAAGATCCGACCATGGGCAAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTG 54611 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 54610 GGTCTGAAGACTGG 54597 >seq653 Length=48578 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGTTCA--TTCGCGGAACGT 22494 || ||||| || ||||| || || ||||| ||| | | | || || ||||| | ||| Sbjct 5978 AAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGT 5919 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 ||| | || || |||| ||||| ||||| ||||| || || || ||| | |||||| Sbjct 5918 CTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTT 5859 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || || || ||||| | || || Sbjct 5858 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGC 5799 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 || || || || || ||||||||||| || |||| || Sbjct 5798 GACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTA 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303322589552174