Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1236 136 3e-27 seq84 105 4e-18 seq1304 100 2e-16 >seq1236 Length=11430 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2226 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2285 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2286 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2320 >seq84 Length=201946 Score = 105 bits (116), Expect = 4e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGTAAGGGAA 6252 |||||| |||||||| ||||| ||| | || | | | ||||| ||||||| ||||| | Sbjct 107628 GGACGCCTTCTACCGTTACAAGATGGAGAAGCTTGT-CACCAAGATCGAGGGCAAGGGTA 107570 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312 ||||||| || ||||| || |||||| || || ||| | | |||| ||||||| Sbjct 107569 ACGGTATCAAGACCGTTATCGTCAACCTGAGCAGCGTTGCTCAATCCCTCGCTCGCCCTG 107510 Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 ||| | || || ||||| | ||| || || || ||||| | | |||| | Sbjct 107509 GTGCCTTTGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGATCCCG 107450 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 |||| |||| ||| | ||||| || || ||| | |||||||||||||| || | Sbjct 107449 CCGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGATCATCTCG 107390 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 | || || || ||| || || || || | | ||| | ||||| |||||||| Sbjct 107389 ATGGTTTCATCAACAAATTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 107335 >seq1304 Length=9648 Score = 100 bits (110), Expect = 2e-16 Identities = 82/100 (82%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || || ||||||| ||||||| ||||| ||||||||||||||||||||||| | | Sbjct 2402 TTCTACTAAGCCCATTCCCTTAGCTGTAGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 2461 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||| |||||| ||||| || |||||||||||||| || Sbjct 2462 ATCTCATTAATCTATTCATACGTGTCACTAATTAGATAAC 2501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939619412167