Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1236 136 3e-27
seq84 105 4e-18
seq1304 100 2e-16
>seq1236
Length=11430
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2226 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2285
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2286 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2320
>seq84
Length=201946
Score = 105 bits (116), Expect = 4e-18
Identities = 202/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGTAAGGGAA 6252
|||||| |||||||| ||||| ||| | || | | | ||||| ||||||| ||||| |
Sbjct 107628 GGACGCCTTCTACCGTTACAAGATGGAGAAGCTTGT-CACCAAGATCGAGGGCAAGGGTA 107570
Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTG 6312
||||||| || ||||| || |||||| || || ||| | | |||| |||||||
Sbjct 107569 ACGGTATCAAGACCGTTATCGTCAACCTGAGCAGCGTTGCTCAATCCCTCGCTCGCCCTG 107510
Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372
||| | || || ||||| | ||| || || || ||||| | | |||| |
Sbjct 107509 GTGCCTTTGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGATCCCG 107450
Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432
|||| |||| ||| | ||||| || || ||| | |||||||||||||| || |
Sbjct 107449 CCGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGATCATCTCG 107390
Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
| || || || ||| || || || || | | ||| | ||||| ||||||||
Sbjct 107389 ATGGTTTCATCAACAAATTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 107335
>seq1304
Length=9648
Score = 100 bits (110), Expect = 2e-16
Identities = 82/100 (82%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949
|| || ||||||| ||||||| ||||| ||||||||||||||||||||||| | |
Sbjct 2402 TTCTACTAAGCCCATTCCCTTAGCTGTAGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 2461
Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
||||| |||||| ||||| || |||||||||||||| ||
Sbjct 2462 ATCTCATTAATCTATTCATACGTGTCACTAATTAGATAAC 2501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334939619412167
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |