Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq653 82.4 9e-11 >seq653 Length=48578 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| ||||| || | |||||||| || || || | |||||| ||| || | Sbjct 5769 GCAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAG 5828 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || |||||||||||||| || || ||||| ||| || || || Sbjct 5829 GCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAA 5888 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT--- 93267 || || || || || || || || |||| ||| | || ||| | ||| || || Sbjct 5889 GATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAA---GTGGACTT-CTGGT 5944 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 | ||||||| || | ||||| ||||| || || Sbjct 5945 CGTTGATCCACTTGAGGGCCCAGTCGGCCTTCTT 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847873868680