Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq951 87.8 4e-12 seq755 87.8 4e-12 seq572 87.8 4e-12 seq532 87.8 4e-12 seq42 87.8 4e-12 seq29 87.8 4e-12 seq8 87.8 4e-12 seq3 87.8 4e-12 seq939 86.0 1e-11 seq330 86.0 1e-11 seq60 86.0 1e-11 seq10 86.0 1e-11 >seq9 Length=373996 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 41834 CTCCCGTATCGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAACGTCCT 41893 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | | || ||||| | | |||| ||||| || || || Sbjct 41894 TACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 41953 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||| || ||||||||||||| |||||| | | Sbjct 41954 CTACATCAAGCAGCACGCTTTCGCCCACATTGACAACCACCTGGACAGTACTCCTTCCGA 42013 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 42014 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 42064 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || || ||| ||||||| | ||||| ||||| |||||||| || || |||||| Sbjct 42399 GGCCTCGACGCCGAGTTGGTCTCCCACTCCCGCATGCGCGGTCTGTCCGGTGGCCAGCGT 42458 Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 ||||| | ||| ||| || ||||| ||||| | || ||| |||||||||| ||||| Sbjct 42459 GTCAAGGTCGTCCTCGCCGCTTGCTCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGA 42517 Query 280799 GCCTACCAACTATCTGGACCGCGA 280822 |||||||||||| ||||||| || Sbjct 42518 GCCTACCAACTACTTGGACCGTGA 42541 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || ||||| |||||||||||| ||||| | |||| ||||| || | Sbjct 128225 GTCGGCTCGCTCTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCTCGTGCCATGCTGAAG 128284 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||||||| || |||| || || || ||||||||| |||| ||||| | ||| Sbjct 128285 GGTGCCGATGTTCTGTTGCTGGACGAACCTACCAACCACTTGGATGTTGCCAACATCGCC 128344 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 128345 TGGCTTGAGACCTACCT 128361 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| |||||| || || || |||| |||||||| || ||| Sbjct 41019 GGTGAGGACCTCTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTCCTCAAC 41078 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 41079 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 41138 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 41139 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 41197 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 41198 GAACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 41239 >seq951 Length=24941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 1493 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 1434 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 1433 CCCACGTCGGGCTCAATTC-CCGTC 1410 >seq755 Length=38367 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 35224 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 35165 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 35164 CCCACGTCGGGCTCAATTC-CCGTC 35141 >seq572 Length=56879 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 30337 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 30278 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 30277 ACCCCCACGTCGGGCTCAATTC-CCGTC 30251 >seq532 Length=61575 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 42697 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 42638 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 42637 ACCCCCACGTCGGGCTCAATTC-CCGTC 42611 >seq42 Length=261225 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 148541 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 148600 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 148601 CCCACGTCGGGCTCAATTC-CCGTC 148624 >seq29 Length=294672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 73617 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 73558 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 73557 ACCCCCACGTCGGGCTCAATTC-CCGTC 73531 >seq8 Length=407268 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 156809 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 156750 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 156749 CCCACGTCGGGCTCAATTC-CCGTC 156726 >seq3 Length=496435 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 95316 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 95257 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 95256 CCCACGTCGGGCTCAAATC-CCGTC 95233 >seq939 Length=25980 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 16796 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 16855 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 16856 CCCACGTCGGGC 16867 >seq330 Length=93671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 36758 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 36699 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 36698 CCCACGTCGGGC 36687 >seq60 Length=229496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 200299 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 200358 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 200359 CCCACGTCGGGC 200370 >seq10 Length=367524 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 342298 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 342357 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 342358 CCCACGTCGGGC 342369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812344871737