Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 3e-20
seq951 87.8 4e-12
seq755 87.8 4e-12
seq572 87.8 4e-12
seq532 87.8 4e-12
seq42 87.8 4e-12
seq29 87.8 4e-12
seq8 87.8 4e-12
seq3 87.8 4e-12
seq939 86.0 1e-11
seq330 86.0 1e-11
seq60 86.0 1e-11
seq10 86.0 1e-11
>seq9
Length=373996
Score = 114 bits (126), Expect = 3e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | |||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct 41834 CTCCCGTATCGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAACGTCCT 41893
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | | || ||||| | | |||| ||||| || || ||
Sbjct 41894 TACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 41953
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| |||||| || ||||||||||||| |||||| | |
Sbjct 41954 CTACATCAAGCAGCACGCTTTCGCCCACATTGACAACCACCTGGACAGTACTCCTTCCGA 42013
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 42014 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGCGAGACCATGGACCG 42064
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739
|| || ||| ||||||| | ||||| ||||| |||||||| || || ||||||
Sbjct 42399 GGCCTCGACGCCGAGTTGGTCTCCCACTCCCGCATGCGCGGTCTGTCCGGTGGCCAGCGT 42458
Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798
||||| | ||| ||| || ||||| ||||| | || ||| |||||||||| |||||
Sbjct 42459 GTCAAGGTCGTCCTCGCCGCTTGCTCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGA 42517
Query 280799 GCCTACCAACTATCTGGACCGCGA 280822
|||||||||||| ||||||| ||
Sbjct 42518 GCCTACCAACTACTTGGACCGTGA 42541
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || ||||| |||||||||||| ||||| | |||| ||||| || |
Sbjct 128225 GTCGGCTCGCTCTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCTCGTGCCATGCTGAAG 128284
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|||||||||| || |||| || || || ||||||||| |||| ||||| | |||
Sbjct 128285 GGTGCCGATGTTCTGTTGCTGGACGAACCTACCAACCACTTGGATGTTGCCAACATCGCC 128344
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 128345 TGGCTTGAGACCTACCT 128361
Score = 91.5 bits (100), Expect = 3e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| |||||| || || || |||| |||||||| || |||
Sbjct 41019 GGTGAGGACCTCTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTCCTCAAC 41078
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 41079 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 41138
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 41139 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 41197
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
||||| | ||| || | || ||||||||| | |||||
Sbjct 41198 GAACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 41239
>seq951
Length=24941
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 1493 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 1434
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 1433 CCCACGTCGGGCTCAATTC-CCGTC 1410
>seq755
Length=38367
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 35224 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 35165
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 35164 CCCACGTCGGGCTCAATTC-CCGTC 35141
>seq572
Length=56879
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 30337 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 30278
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 30277 ACCCCCACGTCGGGCTCAATTC-CCGTC 30251
>seq532
Length=61575
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 42697 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 42638
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 42637 ACCCCCACGTCGGGCTCAATTC-CCGTC 42611
>seq42
Length=261225
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 148541 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 148600
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 148601 CCCACGTCGGGCTCAATTC-CCGTC 148624
>seq29
Length=294672
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 73617 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 73558
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 73557 ACCCCCACGTCGGGCTCAATTC-CCGTC 73531
>seq8
Length=407268
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 156809 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 156750
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 156749 CCCACGTCGGGCTCAATTC-CCGTC 156726
>seq3
Length=496435
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 95316 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 95257
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 95256 CCCACGTCGGGCTCAAATC-CCGTC 95233
>seq939
Length=25980
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 16796 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 16855
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 16856 CCCACGTCGGGC 16867
>seq330
Length=93671
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 36758 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 36699
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 36698 CCCACGTCGGGC 36687
>seq60
Length=229496
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 200299 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 200358
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 200359 CCCACGTCGGGC 200370
>seq10
Length=367524
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 342298 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 342357
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 342358 CCCACGTCGGGC 342369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027812344871737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |