Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq137 176 8e-39
seq1 176 8e-39
seq9 154 3e-32
seq653 86.0 1e-11
>seq137
Length=159453
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | || |||||||| ||
Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 53187
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||||||||| |||||||| ||
Sbjct 53186 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 53137
>seq1
Length=623116
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| ||||| | |||||||| | || ||||| || || ||||| |||||||||
Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || |||||||| ||||| | || ||||| || |||
Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | ||||||| |||||||| || | || || ||
Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 264773
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| || || || || ||||||||||| ||||||||
Sbjct 264772 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 265180 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 265121
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || |||||||| || ||||| || || | ||| ||||| || |||
Sbjct 265120 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 265061
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||| || ||||||||||||| || || |||
Sbjct 265060 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 265001
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || || || | |||||||||||| || |||||
Sbjct 265000 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || ||||| || ||||||||||| || ||| |
Sbjct 264724 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTG 264665
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || |||||||| ||
Sbjct 264664 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 264605
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 264604 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACC 264545
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| ||||| ||||
Sbjct 264544 TCGAGAGTGATGGTCTTTCCGGTGA 264520
>seq9
Length=373996
Score = 154 bits (170), Expect = 3e-32
Identities = 671/1040 (65%), Gaps = 46/1040 (4%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || || ||||||||||||| ||||| ||| ||||||
Sbjct 42028 CGCCACTGGATGTACTCGGAAGGAGTACTGTCCAGGTGGTTGTCAATGTGGGCGAAAGCG 41969
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | || || ||
Sbjct 41968 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 41909
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
| || || || || ||||| |||||||| |||| |||||| ||||| |||||||||||
Sbjct 41908 ACGAGC-TCACCAGTAAGGACGTTGATGAGGGTAGACTTGCCAGCACCGTTGGGGCCAAT 41850
Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTC--AG 225215
||| | || ||||| || ||| ||| || | | || | |||||| ||
Sbjct 41849 GACGGCGATACGGGAGCCGAGCGAGCA--CTGGAAGGTGATGTCGG---AGATCTGGTAG 41795
Query 225216 GGCCAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
| | | | |||| |||| || | |||| || |||||| |
Sbjct 41794 GTGCTGGTACCGGGGTACTGGAAGGACATCTTGTGGGCACGGAG------GATGGCCTTG 41741
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||| ||||| ||| | | | | |
Sbjct 41740 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCAGGGAAGCGGAACTCGACCTCGGAG 41681
Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
| || ||||||||||| || ||| ||| ||||| ||||||||||
Sbjct 41680 GCACCGAGCTCGTAGTAAGACTTGGCAGAGGGGTTCTTCTTGACGAACTCAGACAGGTTA 41621
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| ||| | ||||||||| | || |||| || | || ||| | ||| ||
Sbjct 41620 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACGTT 41565
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503
||| |||||||| ||||||||||| || |||||||| | || | | ||| | ||
Sbjct 41564 GTCGAGGAAGCCGGAGTCGTGGGAAACGATGATGGAAGTGCAGG---GGGAGGTAGT-GA 41509
Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| |||
Sbjct 41508 GGTA-GTCCTCGAGCCACCTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTCGAGA 41450
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
||||||||||| | | || || ||| || |||| ||||||||| ||||| ||
Sbjct 41449 AGCAGGATGTCGGGGGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCA 41390
Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682
|| ||||| | || ||| | | | | | | | |||||| |||| ||||
Sbjct 41389 CCAGACAGAGCGCTGATCTCACCCTTAACCATGCCGTTGGTGAAGCCGAACTCGTTGAGC 41330
Query 225683 GT---CTGGATAATGCGCTCGGGAGA-GCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738
| || || | || ||||| | || | |||| | | | | | | |
Sbjct 41329 TTAGCCTCGACG-TCAGCCTGGGAGGTGGTGACACCGGCGTCCTGGAGCTTCTTCATGGT 41271
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798
| || |||||| || | ||| | ||| | |||||| || ||| | || ||
Sbjct 41270 CCAGTCGATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGT 41211
Query 225799 CCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857
| || || | || | |||||| ||||| | ||| | || || ||||| | |
Sbjct 41210 CTTGACCTCGTTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGA 41152
Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917
|||| |||||| | |||||||||||| || ||||| | | || |||||||
Sbjct 41151 GGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGAC 41092
Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977
||| | || ||| ||||| |||||| |||| |||||||||||||| ||| | ||
Sbjct 41091 GGAGATGGGTCTGGTTGAGGAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGC 41032
Query 225978 ACAGGTCCTCACCCTCCTCG 225997
| ||||||||||||||||||
Sbjct 41031 AGAGGTCCTCACCCTCCTCG 41012
>seq653
Length=48578
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
||||||||||| ||||||||||| || | || || ||| |||||||||| ||||||
Sbjct 5464 TTCATGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCA 5523
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT 10027
| ||||| ||| |||||| ||||||||||| ||
Sbjct 5524 CCAAGGGAGATGTTCTCCATAAAGTCAAAGGGATT 5558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921601006840040
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