Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq137 176 8e-39 seq1 176 8e-39 seq9 154 3e-32 seq653 86.0 1e-11 >seq137 Length=159453 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || |||||||| || Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 53187 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 53186 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 53137 >seq1 Length=623116 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | |||||||| | || ||||| || || ||||| ||||||||| Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| ||||| | || ||||| || ||| Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| |||||||| || | || || || Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 264773 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || || || || ||||||||||| |||||||| Sbjct 264772 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| || |||||||| |||||||| Sbjct 265180 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 265121 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| || ||||| || || | ||| ||||| || ||| Sbjct 265120 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 265061 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||| || ||||||||||||| || || ||| Sbjct 265060 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 265001 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | |||||||||||| || ||||| Sbjct 265000 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || ||||||||||| || ||| | Sbjct 264724 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTG 264665 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || |||||||| || Sbjct 264664 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 264605 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 264604 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACC 264545 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| ||||| |||| Sbjct 264544 TCGAGAGTGATGGTCTTTCCGGTGA 264520 >seq9 Length=373996 Score = 154 bits (170), Expect = 3e-32 Identities = 671/1040 (65%), Gaps = 46/1040 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || || ||||||||||||| ||||| ||| |||||| Sbjct 42028 CGCCACTGGATGTACTCGGAAGGAGTACTGTCCAGGTGGTTGTCAATGTGGGCGAAAGCG 41969 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 41968 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 41909 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || || || ||||| |||||||| |||| |||||| ||||| ||||||||||| Sbjct 41908 ACGAGC-TCACCAGTAAGGACGTTGATGAGGGTAGACTTGCCAGCACCGTTGGGGCCAAT 41850 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTC--AG 225215 ||| | || ||||| || ||| ||| || | | || | |||||| || Sbjct 41849 GACGGCGATACGGGAGCCGAGCGAGCA--CTGGAAGGTGATGTCGG---AGATCTGGTAG 41795 Query 225216 GGCCAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 | | | | |||| |||| || | |||| || |||||| | Sbjct 41794 GTGCTGGTACCGGGGTACTGGAAGGACATCTTGTGGGCACGGAG------GATGGCCTTG 41741 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||| ||||| ||| | | | | | Sbjct 41740 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCAGGGAAGCGGAACTCGACCTCGGAG 41681 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 | || ||||||||||| || ||| ||| ||||| |||||||||| Sbjct 41680 GCACCGAGCTCGTAGTAAGACTTGGCAGAGGGGTTCTTCTTGACGAACTCAGACAGGTTA 41621 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | ||||||||| | || |||| || | || ||| | ||| || Sbjct 41620 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACGTT 41565 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| |||||||| ||||||||||| || |||||||| | || | | ||| | || Sbjct 41564 GTCGAGGAAGCCGGAGTCGTGGGAAACGATGATGGAAGTGCAGG---GGGAGGTAGT-GA 41509 Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 ||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| ||| Sbjct 41508 GGTA-GTCCTCGAGCCACCTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTCGAGA 41450 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||||||||| | | || || ||| || |||| ||||||||| ||||| || Sbjct 41449 AGCAGGATGTCGGGGGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCA 41390 Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || ||||| | || ||| | | | | | | | |||||| |||| |||| Sbjct 41389 CCAGACAGAGCGCTGATCTCACCCTTAACCATGCCGTTGGTGAAGCCGAACTCGTTGAGC 41330 Query 225683 GT---CTGGATAATGCGCTCGGGAGA-GCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | || || | || ||||| | || | |||| | | | | | | | Sbjct 41329 TTAGCCTCGACG-TCAGCCTGGGAGGTGGTGACACCGGCGTCCTGGAGCTTCTTCATGGT 41271 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798 | || |||||| || | ||| | ||| | |||||| || ||| | || || Sbjct 41270 CCAGTCGATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGT 41211 Query 225799 CCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | || || | || | |||||| ||||| | ||| | || || ||||| | | Sbjct 41210 CTTGACCTCGTTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGA 41152 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||| | |||||||||||| || ||||| | | || ||||||| Sbjct 41151 GGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGAC 41092 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 ||| | || ||| ||||| |||||| |||| |||||||||||||| ||| | || Sbjct 41091 GGAGATGGGTCTGGTTGAGGAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGC 41032 Query 225978 ACAGGTCCTCACCCTCCTCG 225997 | |||||||||||||||||| Sbjct 41031 AGAGGTCCTCACCCTCCTCG 41012 >seq653 Length=48578 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 ||||||||||| ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 5464 TTCATGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCA 5523 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT 10027 | ||||| ||| |||||| ||||||||||| || Sbjct 5524 CCAAGGGAGATGTTCTCCATAAAGTCAAAGGGATT 5558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921601006840040