Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq298 479 5e-130 seq653 248 2e-60 >seq298 Length=101239 Score = 479 bits (530), Expect = 5e-130 Identities = 1084/1612 (67%), Gaps = 61/1612 (4%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA-GG 243934 ||||||||| || |||||||| ||||| |||| || || || ||||| | || || Sbjct 54674 GTTGAGGGATTGAGACTGGTCGATGAAGG-CGCCACGGTCGGCAGCCATCTGTACGACGG 54732 Query 243935 TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCT 243994 | | ||| || ||||| || |||||||||| | || ||||| | | |||| Sbjct 54733 TACG-CTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCTCGGCAGGGATGTTG 54791 Query 243995 TCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 |||||| || | ||||| || | | |||| || | |||| ||| |||| Sbjct 54792 GGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTCTTCATGCCGTCGGACCAC 54851 Query 244055 AGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTCACCACCTGAAACTCTCCC 244111 || |||| | || ||| || || || | || || ||||| ||||| || Sbjct 54852 AGTCCCATCTCGACAAGGTCCTTGAGAAG---CCAGGGATTGACGACCTGGAACTCGCCA 54908 Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171 | || |||||||||||||||| |||| | || || |||| || ||| |||||||| Sbjct 54909 GCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCC 54968 Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231 || ||||||| ||||| ||||| |||||||| | || ||||||||||| | |||||| Sbjct 54969 AGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCG 55028 Query 244232 TGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA---GTCCCACATGCCCGAGAGGTCCTCG 244288 ||| || ||| ||| ||| ||| | |||||| | || ||||||| | Sbjct 55029 TGCTGCTTGAT-------CTG--CTCTTTCAAAGAGTCCCA---GTCCCAGAGGTCAGAG 55076 Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348 | |||| | |||||||||| |||| || | ||||||| || ||| ||| ||||| Sbjct 55077 GGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTAC 55136 Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 | | ||||| || || ||| |||| || ||| | | ||||||||||| |||| Sbjct 55137 GAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAG 55196 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGC 244466 ||||||||||||||| ||||||| | ||| || || | | |||| |||||| |||| Sbjct 55197 ATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTT--CAGCAGACTCGAAGGGCATGC 55254 Query 244467 CCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526 || | ||| | || || || ||||| ||||||| |||||||| | || ||| Sbjct 55255 GCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCA 55314 Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586 ||||| | ||| || | || ||||| |||| |||| || | | |||| | || Sbjct 55315 TGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAGT 55374 Query 244587 TGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCT 244646 ||||| || | || ||| ||| || | ||| ||||| || || ||| Sbjct 55375 TGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATA-------GGTGCCT 55427 Query 244647 CGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCA 244706 | | || | || || | ||||| | ||||||||||||||||| | Sbjct 55428 TCGTTGTAGTCA-----ACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAA 55482 Query 244707 CCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGC 244766 |||| || | | ||||| || || || ||||| ||||| || |||||| | Sbjct 55483 CCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTAC 55542 Query 244767 CCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCC 244826 | |||| || || ||| |||| |||| |||||||||||| ||||||||||| | Sbjct 55543 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGC 55602 Query 244827 CGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC 244886 | ||||| ||| || | |||| | || ||| || | | ||||||| ||| ||| Sbjct 55603 CCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGC 55662 Query 244887 GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCT 244946 || |||| ||||| |||||| ||||| ||||| ||||| ||| | | Sbjct 55663 GACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGT 55722 Query 244947 CGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || | ||||||| |||| || ||| ||||||||| |||| || ||| | || ||| Sbjct 55723 CGGCGAGGCCGGAGCAC-TCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACT 55781 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| || |||||||| ||||| |||| || || | || | ||| Sbjct 55782 CTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCC 55841 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| ||| |||||| | || || | || || ||||| ||| ||||||||||||| Sbjct 55842 TCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCA 55901 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 | ||||| |||| ||| || || |||||||| || || ||||| | | | ||||| Sbjct 55902 AGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGA----CATAGCGAGC 55957 Query 245186 G----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 | |||||||| ||||| |||| || | ||||| ||| |||||||||||| Sbjct 55958 GGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGC 56017 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGT 245297 |||||||| ||| || | | ||| ||||||| | || | || || || Sbjct 56018 GATGTAGGAGCCAGTGGAAC---GAATGC-GATGGACGTTGAGACCGATGCCTCCAGCCA 56073 Query 245298 GCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACT 245357 |||||| || | |||||| |||||| |||||| ||||| || ||| |||| || Sbjct 56074 TCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCT 56133 Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417 |||| | || || ||||| || ||||| |||| || ||| ||| | ||||||||||| Sbjct 56134 TCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAG 56193 Query 245418 TGGGGCTGGCGTGGGTAAAGTAGC-GGCTCGAGAGGAACCCGTACGTCTGGA 245468 |||| ||| ||||| || ||| |||||| | || |||||||| || Sbjct 56194 TGGGCGAGGCATGGGTGAA-CAGCTTGCTCGACATCAAGTTGTACGTCTCGA 56244 >seq653 Length=48578 Score = 248 bits (274), Expect = 2e-60 Identities = 375/522 (72%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 |||||||| |||||||| |||||||| ||||| |||||| | | || || | | || Sbjct 5990 CCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAAC-GACCAGAAGTCCAC 5932 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| || | || || ||||| | || || ||||||||||||||||| || ||||| Sbjct 5931 TTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT 5872 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 || |||||||| ||||||||| || ||| || ||||| || || |||||||| || | Sbjct 5871 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGCCTGACCTTCTCCAATG 5813 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | ||||| || ||||| | || ||||||||||| || | ||| || Sbjct 5812 AACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTC---CC 5756 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 |||| | |||| ||| ||| || |||||| |||||| || ||||| ||| Sbjct 5755 ACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGA 5696 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC----GTGTCCCTGGTCGGCATGAACCAC 42986 | ||| ||||||||||||| || | |||||| || ||| |||| ||||| | Sbjct 5695 TTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCC----TCGGGATGAATTCC 5640 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045 |||||||| ||||||| | | || ||||||| ||| || || | || | Sbjct 5639 AACCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAAT 5580 Query 43046 CAGCCGCCTCTACAA--CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | | ||||||| || || | ||||| |||||||||||||||||||| | | Sbjct 5579 GAAAAG-GTCTACAAGTCAAGCAAT--CCCTTTGACTTTATGGAGAACATCTCCCTTGGT 5523 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| || |||||||| |||||||| |||||| Sbjct 5522 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAG 5481 Score = 125 bits (138), Expect = 1e-23 Identities = 224/324 (69%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||||||||||||||||||| || |||||||| Sbjct 6373 ATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTGTCCAAGGAC 6314 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 || |||| | | || | | || |||| ||||| ||| || |||| || Sbjct 6313 CTTCACGACTGGAA-TAACAAGATTAACGACGACGAGAAGTTCTTCATCTCTCACATCCT 6255 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||||| ||||| || ||||| |||||||||| | |||| Sbjct 6254 CGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACGCTTCAGCGG 6195 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || || ||| | |||||||| |||||||||||||||||||| || || ||| | Sbjct 6194 TGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGATGGAAAACAT 6135 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| || | || || | |||||||| ||| || | |||| | Sbjct 6134 CCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCCTGCTCAGCGCAC 6075 Query 42605 CGGGCTGTTCAAGGCCATGGAGAC 42628 | |||||||| ||||| || || Sbjct 6074 CTATCTGTTCAACGCCATTGACAC 6051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944317279526320