Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 6e-23
seq137 104 6e-17
>seq1
Length=623116
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || || |||| ||||||||| || || || | ||||||||| ||||||
Sbjct 264916 TCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAG 264857
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || | || || || || || ||||| || |||| || |||||
Sbjct 264856 ATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 264797
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || || | || || ||||| ||||||||||||||||||
Sbjct 264796 TCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACG 264737
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 264736 AAAATCTGCAT 264726
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| ||||| | || || | || | ||| || || ||||| || || |||
Sbjct 265183 TGACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 265124
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || || || || || || || || || |||||||| ||||| || || |
Sbjct 265123 GATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGA 265064
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || || || || |||||||| || ||| ||||| || || || | || || ||
Sbjct 265063 GGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCTGAAGACTC 265005
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||||||||| ||||||| ||||||||||| || |||||
Sbjct 265004 GACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954
>seq137
Length=159453
Score = 104 bits (114), Expect = 6e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || |||||||
Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || |||||||||| ||||| || |||
Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| || || ||
Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 53187
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 53186 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 53137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179626332704046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |