Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq298 150 2e-31 seq653 116 4e-21 >seq298 Length=101239 Score = 150 bits (166), Expect = 2e-31 Identities = 1133/1811 (63%), Gaps = 65/1811 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || ||||| || ||| |||||||| | | ||||| || Sbjct 54582 CGCAGGTAGTACATTCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTG 54641 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | || ||| || |||| | ||| | ||| || || ||||||||| Sbjct 54642 ATCTTGCCCATGGTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAG 54701 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 ||||| || || ||||| | | || | || | || |||||||| || Sbjct 54702 GCGCCACGGTCGGCAGCCATCTGTACGACGG---TACGCTGGGAAATCTCCCACACCGTC 54758 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| | | ||| | || | ||||| | ||| ||||| ||||||||| | | Sbjct 54759 TTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCA 54818 Query 113834 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | ||| | | |||||| | | ||||| || || |||| || |||| | Sbjct 54819 GCAATGATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTT---G 54875 Query 113894 AGATGCTT---ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 ||| || |||||| || ||||| || ||||| ||| | | | ||||| ||| Sbjct 54876 AGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTG 54935 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| || || |||||||| ||||| |||| || || | ||| || |||||| Sbjct 54936 GAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGC 54995 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| || | ||| || ||||| |||| || | | | | || | || || | | | Sbjct 54996 ATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAG 55055 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130 |||||||| || | | || | | |||||| || ||||||| || || | | Sbjct 55056 TCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTG 55115 Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190 || | || || || || | | ||| | ||| || ||| |||||| | | || | Sbjct 55116 GAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGAC 55175 Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG-GCCTC 114249 |||||| ||||| || || ||||| || || || | | || | || || Sbjct 55176 ATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-GTCTCGAGCTTC 55234 Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309 | || || || | | || || || |||| || || || ||||| ||||| Sbjct 55235 AGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAG 55294 Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 114369 || || |||||||| | ||| || || || || || || || || || Sbjct 55295 ACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGAC 55354 Query 114370 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 114429 || || | ||| || | || | |||||||| |||| || || | ||| | | | Sbjct 55355 GTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAA 55414 Query 114430 ATCAAAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAG 114483 ||| | ||| |||| ||| || | | || ||||| | || ||||| Sbjct 55415 GTCATAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAG 55468 Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543 || || || | |||||| | | |||||| || ||||| || || | || || Sbjct 55469 GTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGA 55528 Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603 || ||||| || | |||||| || || ||| ||| || |||||||| || Sbjct 55529 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAG 55588 Query 114604 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGG 114662 |||| | || | ||||||||||| || | || || || || | ||| | | || | | Sbjct 55589 CATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGC 55648 Query 114663 CTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCTT 114716 || | ||| ||| || |||| |||| ||||||||| ||| | || | Sbjct 55649 CTTGA----TGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCT 55701 Query 114717 CAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAG 114773 ||||||| || || || | || | ||| || || || | |||| || | ||||| Sbjct 55702 CAAACTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAG 55758 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | ||| || ||| || | |||||||||||| || |||||||| || || || Sbjct 55759 TCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGA 55818 Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 | ||||| || || | || || | || || || || | || | || || | Sbjct 55819 AAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGA 55878 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------AC 114947 || ||| |||||||| || || ||||| | |||| | || | | || || Sbjct 55879 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTTGTTAC 55935 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 | | |||| ||||| | || ||| || || || || ||||| || | || ||| | Sbjct 55936 CGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGT 55995 Query 115008 CAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTG 115065 || || || || ||| ||| || ||| | | ||| | | ||||| || Sbjct 55996 TGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAACGAATGCGATGGACGTT 56053 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 | ||| || || || ||| ||| || || |||||| | |||| || ||||||| Sbjct 56054 GAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGAT 56113 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT-G 115184 || ||||| ||||| |||| | ||| |||||||| |||| ||| ||||| | Sbjct 56114 GCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAG 56172 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTT 115242 | || || |||||||| || || || | || ||| |||||| |||| |||||| Sbjct 56173 GGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG--CTTGCTCGACATCAA 56230 Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302 | ||| ||||| | ||| || || || || ||| || | | ||| ||||| Sbjct 56231 GTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCAT 56290 Query 115303 AAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 115362 || ||||| ||| || | || | | ||||||| | | ||||||| | |||| Sbjct 56291 AATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTC 56350 Query 115363 CAAGGTCTTGA 115373 ||||||||||| Sbjct 56351 CAAGGTCTTGA 56361 >seq653 Length=48578 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || || ||||| || |||||||||||||| |||||| ||| || Sbjct 5772 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 5831 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | ||| || || | ||| | ||| ||||||||||| Sbjct 5832 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGAT 5891 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| ||| ||||| || | ||||||| ||| || Sbjct 5892 GCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 5930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339733929560