Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq298 150 2e-31
seq653 116 4e-21
>seq298
Length=101239
Score = 150 bits (166), Expect = 2e-31
Identities = 1133/1811 (63%), Gaps = 65/1811 (4%)
Strand=Plus/Plus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
|| ||||||||||| || ||||| || ||| |||||||| | | ||||| ||
Sbjct 54582 CGCAGGTAGTACATTCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTG 54641
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| | || ||| || |||| | ||| | ||| || || |||||||||
Sbjct 54642 ATCTTGCCCATGGTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAG 54701
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773
||||| || || ||||| | | || | || | || |||||||| ||
Sbjct 54702 GCGCCACGGTCGGCAGCCATCTGTACGACGG---TACGCTGGGAAATCTCCCACACCGTC 54758
Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833
|||| | | ||| | || | ||||| | ||| ||||| ||||||||| | |
Sbjct 54759 TTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCA 54818
Query 113834 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893
| ||| | | |||||| | | ||||| || || |||| || |||| |
Sbjct 54819 GCAATGATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTT---G 54875
Query 113894 AGATGCTT---ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950
||| || |||||| || ||||| || ||||| ||| | | | ||||| |||
Sbjct 54876 AGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTG 54935
Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010
| ||||| || || |||||||| ||||| |||| || || | ||| || ||||||
Sbjct 54936 GAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGC 54995
Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070
||||| || | ||| || ||||| |||| || | | | | || | || || | | |
Sbjct 54996 ATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAG 55055
Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130
|||||||| || | | || | | |||||| || ||||||| || || | |
Sbjct 55056 TCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTG 55115
Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190
|| | || || || || | | ||| | ||| || ||| |||||| | | || |
Sbjct 55116 GAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGAC 55175
Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG-GCCTC 114249
|||||| ||||| || || ||||| || || || | | || | || ||
Sbjct 55176 ATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-GTCTCGAGCTTC 55234
Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309
| || || || | | || || || |||| || || || ||||| |||||
Sbjct 55235 AGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAG 55294
Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 114369
|| || |||||||| | ||| || || || || || || || || ||
Sbjct 55295 ACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGAC 55354
Query 114370 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 114429
|| || | ||| || | || | |||||||| |||| || || | ||| | | |
Sbjct 55355 GTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAA 55414
Query 114430 ATCAAAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAG 114483
||| | ||| |||| ||| || | | || ||||| | || |||||
Sbjct 55415 GTCATAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAG 55468
Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543
|| || || | |||||| | | |||||| || ||||| || || | || ||
Sbjct 55469 GTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGA 55528
Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603
|| ||||| || | |||||| || || ||| ||| || |||||||| ||
Sbjct 55529 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAG 55588
Query 114604 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGG 114662
|||| | || | ||||||||||| || | || || || || | ||| | | || | |
Sbjct 55589 CATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGC 55648
Query 114663 CTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCTT 114716
|| | ||| ||| || |||| |||| ||||||||| ||| | || |
Sbjct 55649 CTTGA----TGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCT 55701
Query 114717 CAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAG 114773
||||||| || || || | || | ||| || || || | |||| || | |||||
Sbjct 55702 CAAACTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAG 55758
Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833
||| | ||| || ||| || | |||||||||||| || |||||||| || || ||
Sbjct 55759 TCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGA 55818
Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893
| ||||| || || | || || | || || || || | || | || || |
Sbjct 55819 AAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGA 55878
Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------AC 114947
|| ||| |||||||| || || ||||| | |||| | || | | || ||
Sbjct 55879 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTTGTTAC 55935
Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007
| | |||| ||||| | || ||| || || || || ||||| || | || ||| |
Sbjct 55936 CGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGT 55995
Query 115008 CAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTG 115065
|| || || || ||| ||| || ||| | | ||| | | ||||| ||
Sbjct 55996 TGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAACGAATGCGATGGACGTT 56053
Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125
| ||| || || || ||| ||| || || |||||| | |||| || |||||||
Sbjct 56054 GAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGAT 56113
Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT-G 115184
|| ||||| ||||| |||| | ||| |||||||| |||| ||| ||||| |
Sbjct 56114 GCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAG 56172
Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTT 115242
| || || |||||||| || || || | || ||| |||||| |||| ||||||
Sbjct 56173 GGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG--CTTGCTCGACATCAA 56230
Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302
| ||| ||||| | ||| || || || || ||| || | | ||| |||||
Sbjct 56231 GTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCAT 56290
Query 115303 AAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 115362
|| ||||| ||| || | || | | ||||||| | | ||||||| | ||||
Sbjct 56291 AATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTC 56350
Query 115363 CAAGGTCTTGA 115373
|||||||||||
Sbjct 56351 CAAGGTCTTGA 56361
>seq653
Length=48578
Score = 116 bits (128), Expect = 4e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || || ||||| || |||||||||||||| |||||| ||| ||
Sbjct 5772 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 5831
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
||||||||||| |||||||| | ||| || || | ||| | ||| |||||||||||
Sbjct 5832 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGAT 5891
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204
||||| ||| ||||| || | ||||||| ||| ||
Sbjct 5892 GCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 5930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597339733929560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |