Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq298 381 6e-101 >seq298 Length=101239 Score = 381 bits (422), Expect = 6e-101 Identities = 1094/1669 (66%), Gaps = 34/1669 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| |||||||||||||||||| |||||| Sbjct 56380 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGGTCGTACCTCCTCAAGATCGATGGC 56321 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| | ||||| || || | ||||| ||||| | || ||| || || Sbjct 56320 AAGATTGCCGAGAGGCCGCAACACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGAC 56261 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || ||| | |||| || ||| ||| Sbjct 56260 AACGTTGAGCGCGTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCC 56201 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || || ||||||||||| || ||||| | | || |||||||||| ||||| | Sbjct 56200 TCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTC 56141 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| ||||||||| || || | ||||| ||||||| || || | || Sbjct 56140 GATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATT 56081 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || ||||| ||| ||||| | | ||| ||| || |||||| Sbjct 56080 TCCAAGATGGCTGGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTCCTAC 56021 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| || ||||| || ||||||||||| ||||||||||||| || |||||||||||| Sbjct 56020 ATCGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAAC 55961 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || ||||| || ||||| || ||| | | | ||| | ||||| |||| || Sbjct 55960 ACCGCTCGCTATGTCGACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTT 55901 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 |||||||||||||| || || | ||| |||| || || |||||||||||||| || Sbjct 55900 GAGCCCTGGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAG 55841 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | || || ||| ||| || ||| | || || || || ||||| | Sbjct 55840 GAGGTCCGTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGA 55781 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||||| ||| | ||||| ||| | |||||||| || || |||| || ||||| Sbjct 55780 GTCGAGAAGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGAC 55721 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAG 94433 || || | ||||| | ||||| | |||| | ||| |||| |||| | Sbjct 55720 TGTTACGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACG-AGCGCGAGGGTAAGGGTCG 55662 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| || | || |||||||||| | ||| | || | ||| ||||||||| Sbjct 55661 CAAGACCATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGG 55602 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | |||| ||| ||| ||||||| | | |||| |||| ||||||| || ||||||| Sbjct 55601 CAACCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 55542 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| || || ||||||| | | || || ||| | Sbjct 55541 TACCATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGT 55482 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 ||| || || ||||||| || | |||| |||| ||||| || ||||| | Sbjct 55481 TGCCGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGT------TGACTACA--AC 55430 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731 | || | | || | || || | | || | ||| || ||| ||| Sbjct 55429 GAAGGC-ACCTATGACTTCCAGAAGTTGCACGAGGTCAC--CCAGGTTGTCGTCCGCAAC 55373 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 |||||||| | || ||| ||| |||||| || | |||||| ||| ||| || Sbjct 55372 TTGAACAGGATCATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATG 55313 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 ||||| |||||||| ||||||||||||| | || || ||| | | |||| Sbjct 55312 CGCCATCGCCCCATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTGCGC 55253 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 |||||| ||| |||| || || | | || ||| || ||||| | ||| || Sbjct 55252 ATGCCCTTCGAGTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTAC 55193 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATC 94970 ||| ||| | | ||| ||| ||||| || ||| | || | || || Sbjct 55192 CACGCCGCCCTCACCATGTCCTGCCAGTTGGCGCA----GGAAGAAGGCACCTACTCCTC 55137 Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030 || | || || || | |||| ||| | |||| |||| | |||| || ||||| Sbjct 55136 GTACGAAGGCTCCCCTGTTTCCAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCC 55077 Query 95031 CTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAA 95088 ||| | || | |||||||| || | | | || || | | | ||||| || Sbjct 55076 CTCTGACCTCTGGGACTGGGACTCTTTGAAAGAGCAGA--TCAAGCAGCACGGCGTCCGC 55019 Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| ||||| || |||||||||||||| || ||| ||||||| || ||||||||| Sbjct 55018 AACAGTCTGCTCGTTGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAAC 54959 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| |||||||| | |||||||||| | ||| | | || || ||||| || || ||| Sbjct 54958 GAGTGCTTCGAACCTTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTC 54899 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAA 95267 | ||| |||| || || ||||| || || |||| ||||| ||| Sbjct 54898 CAGGTCGTCAATCCCTGGCTTCTCAAGGACCTTGTCG-AGATGGGACTGTGGTCCGACGG 54840 Query 95268 GGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATAC 95323 | ||||||| | |||| | || |||||| | || |||||||| | || | Sbjct 54839 CATGAAGAACCGCATCATTGCT----GAGAATGGCTCCATTCAAAACATCCCCAACATCC 54784 Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | | || ||||||| | |||||||| ||||||||||| | ||||| Sbjct 54783 CTGCCGAGGTCAAGGCCTTGTACAAGACGGTGTGGGAGATTTCCCAGCG 54735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711716237720