Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq298 203 3e-47 seq653 150 2e-31 seq1 105 7e-18 seq137 95.1 1e-14 >seq298 Length=101239 Score = 203 bits (224), Expect = 3e-47 Identities = 930/1445 (64%), Gaps = 39/1445 (3%) Strand=Plus/Plus Query 153030 TTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGT 153089 ||||| || || |||||||| || | || || | | || | ||| ||| ||||| Sbjct 54888 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 54947 Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149 || ||| | ||||| ||||| || || || | ||| |||| || |||||| || || Sbjct 54948 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 55007 Query 153150 AACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCA 153208 | || | || || | ||||||| ||| || | | || ||||| | | ||| ||||| Sbjct 55008 AGCAGACTGTTGCGGACGCCGTGCTGCTTGA-TCTGCTCTTTCAAAGAGTCCCAGTCCCA 55066 Query 153209 CAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACA-CTCCTCG---ACTGGCGG 153264 || | || || | ||| ||||||||||||||| | | | ||| | || || | Sbjct 55067 GAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGG--G 55124 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 || ||| | ||| |||| |||| || || |||| | |||| || Sbjct 55125 GA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGA 55182 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | ||| | | ||| ||||| ||| ||| | || ||||| | ||||| | || Sbjct 55183 GGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACT 55242 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | ||||||||||| | || || || || || ||||||| |||| ||||||| Sbjct 55243 CGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGG 55302 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 | ||||| | ||||||| | || ||| || | || ||||| ||| || || Sbjct 55303 GGCGATGGCGCATGTTGCTGTTACGGGC-CTC-CTGAACAGGGTAGTGGTTGACGTCAAT 55360 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 || |||| | |||||| || || || | || | | | | | |||| ||| ||||| Sbjct 55361 GATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATA 55420 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 ||| ||||| | | ||| | || ||| | ||| ||||| || |||||||| Sbjct 55421 GGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGC 55480 Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 ||| || |||| || ||||| | ||| || | ||| |||||| || ||| Sbjct 55481 AACCTCATCAGGCGCCGA-GTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGG 55539 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 || | || | ||| ||||| ||||| ||| ||||| ||| | |||||| | || Sbjct 55540 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGT 55599 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCTCGCACCCGC 153800 ||| ||||| |||| || | ||| | || ||| | ||| || | | Sbjct 55600 TGCCCGTCTCCGTCTGCGCCTCAAGGATGG-CGTACCACAGCTTCTGGGCCTTGATGGTC 55658 Query 153801 TGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAG 153860 | ||| ||||||| |||||| |||||||| ||||||||| |||||||| Sbjct 55659 TTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAA 55718 Query 153861 CAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTG 153920 |||||||||||||||| |||| | |||||||| || | ||| | ||| | | Sbjct 55719 CAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCG 55778 Query 153921 ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA 153980 || | |||||| ||||| || | ||| || ||| | || ||||| || | Sbjct 55779 ACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACC 55838 Query 153981 TCCTCCGCGCCCATGTTGCGTTTC--AGATTGA-GCACGCTATAGATGTCGGCGTGCCAG 154037 |||||| ||| ||| || | |||| || | || | | ||| |||||||||||| Sbjct 55839 TCCTCCTTGCCGTGGTT--CTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTGCCAG 55895 Query 154038 GGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGC 154094 || |||| ||||| ||| | |||||| ||| || ||||| || ||||| | ||| Sbjct 55896 GGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGA 55955 Query 154095 ACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAA 154154 | | ||||||||||| |||| ||| || | | ||| | | ||| |||||||| Sbjct 55956 GCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCC 56015 Query 154155 TTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTA 154213 ||| | | ||| || || | |||| ||||| | || ||||| || ||| | Sbjct 56016 GCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT- 56074 Query 154214 CTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGC 154272 ||| || || ||||| ||| || || ||||||||| |||||| || || Sbjct 56075 CTTGGAAATCATGGCGCACGTC-TTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCT 56133 Query 154273 GGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AAAAGAGG 154331 | ||| | ||| |||||| ||| ||| || || | | | ||| || || || Sbjct 56134 TCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGA 56192 Query 154332 GTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCGATGGCG 154388 ||||| || || || ||||| || ||| ||||| | |||||| ||||| || Sbjct 56193 GTGGGCGAGGCATGGGTGAACAGCTT---GCTCGACATCAAGTTGTACGTCTCGATAACG 56249 Query 154389 TCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGT 154448 || | | || || |||||| | ||||| ||||| | |||||| ||||| | Sbjct 56250 CGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTC 56309 Query 154449 TCGGC 154453 ||||| Sbjct 56310 TCGGC 56314 >seq653 Length=48578 Score = 150 bits (166), Expect = 2e-31 Identities = 347/518 (67%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| ||||| | ||||| | ||||||||| | | | | || Sbjct 5993 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 5934 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || |||| | || |||||||| || |||||| | || || ||||| | Sbjct 5933 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 5874 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||| ||||||||| | || | | || | ||||| |||||||| ||| ||| Sbjct 5873 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 5814 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT---AC 52559 || | || || |||||||||||||||||||| || ||||| ||| ||||||| || Sbjct 5813 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCAC 5754 Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619 || || | | || | || | | || | |||| | ||| | || || Sbjct 5753 CTGAAGCAC-CGCCCCAGCAA--GCA---GGTC---ATCCGGGACATCATTGTCGACGCC 5703 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || || || ||||||| | || | || ||||| || || || || ||||| Sbjct 5702 GTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAAT 5643 Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739 | | |||| ||||||| || |||||||| || |||||| |||| ||||| Sbjct 5642 TCCAACCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGC 5583 Query 52740 CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | |||| || ||| | ||||||| ||||| |||||| | ||||| || |||| Sbjct 5582 AATGAAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGT 5523 Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| || |||||||| |||| ||| || Sbjct 5522 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTA 5485 >seq1 Length=623116 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| | || || ||||| |||||||| |||| Sbjct 264919 GACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCG 264860 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| ||||| ||||| || ||||| ||| | || | || | Sbjct 264859 AAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 264801 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||||| ||||| | || | || || || |||||||| | Sbjct 264800 GTTG-TCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCT 264742 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 264741 TGACGAAAATCTGCAT 264726 >seq137 Length=159453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| | Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| | ||||| ||||| || || Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| |||||||| Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 53188 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||| || || || || || || ||||||||| Sbjct 53187 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 53139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250880509040