Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 156 4e-33
seq298 132 5e-26
seq137 118 1e-21
seq126 93.3 4e-14
>seq1
Length=623116
Score = 156 bits (172), Expect = 4e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | |||||| || | |||||||| || ||||| |||||||||
Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| ||| || || |||||||| ||| |||| | |||||||| || |||||
Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || ||| ||||| ||||| ||| ||| |||| | ||||||
Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGT-CGATGGTATCCGAAGACTCGAC 264774
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || |||||||||||||| || || |||||||||||
Sbjct 264773 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | ||| ||||| || || || |||||||||
Sbjct 265180 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 265121
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||| || |||||| |||| | || ||||| || |||||
Sbjct 265120 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 265061
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| |||||| | | |||||||
Sbjct 265060 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 265001
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| |||||||||| || || || ||||| |||||
Sbjct 265000 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || ||||| || ||||| |||| | |||||| ||| || ||||| || |||
Sbjct 264694 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 264635
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| |||||||| || |||||||||||| || || ||||
Sbjct 264634 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 264575
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| ||| || | ||| || |||| || | || || |||||
Sbjct 264574 ACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 264522
>seq298
Length=101239
Score = 132 bits (146), Expect = 5e-26
Identities = 1000/1578 (63%), Gaps = 100/1578 (6%)
Strand=Plus/Plus
Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097
|| || ||| |||||| || | | ||||| ||||| |||||||| |||||||||||
Sbjct 54861 TCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGG 54920
Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157
| | | || | |||| |||| | || ||||| |||||||||| || || |||||||
Sbjct 54921 CGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAA 54980
Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216
|| | || || |||||| || || |||| | ||| | |||||||| | ||| ||
Sbjct 54981 GTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTG-AT 55039
Query 146217 CT----TTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
|| |||| ||| ||| | ||| | | || | ||| | || | |
Sbjct 55040 CTGCTCTTTCAAAGAGT----CCCAGTCCCAGA---GGTCAGAGGGCTTGACGTCCCACA 55092
Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330
||||||| || | | | || | |||||||| | |||||||| || | ||
Sbjct 55093 TGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCT--TCGTACGAGGAGTAGGTGCC 55150
Query 146331 GTCGATCTTGGCCAGTTCGCAG--CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCG 146388
|| || |||| | |||| | | | || || | ||| |||||||| |
Sbjct 55151 TTCTTCCTGCGCCAACTGGCAGGACATGGT--GAGGGCGGCGTGGTAGATGGTCTCGAAG 55208
Query 146389 ATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA--- 146445
||| | | ||||| | | || || | ||| |||| || | | || ||
Sbjct 55209 ATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCAT---GCGCAGGGCAAGG 55265
Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT- 146504
|| || || || || ||||| | |||| ||| | |||||| || | |||| |||||
Sbjct 55266 AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTA 55325
Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564
|| | || | | ||| ||||||||| ||| |||||| |||| | || || |||||
Sbjct 55326 CGGGCCTCCTGAACAGGG-TAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGAC 55384
Query 146565 AATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACG 146616
|| | |||| ||| ||| | | | ||||| || || ||| || |
Sbjct 55385 AACCTGGGTGACCTCGTGCAAC--TTCTGGAAGTCATAG----GTGCCTTCGTTGTA--G 55436
Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCG 146676
| ||| | || | ||| | ||| |||| ||| || |||||| ||| || | ||
Sbjct 55437 TCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATC--AGGCG 55494
Query 146677 C--AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttttt 146734
| | |||| | || || | ||| |||||| || |||| | || | || || |
Sbjct 55495 CCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCT 55554
Query 146735 GGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCG 146790
|||| || ||| |||| || ||||||||| |||||| | ||| |||| | ||
Sbjct 55555 GGTTGCT---CTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 55611
Query 146791 ACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAG 146849
| | | ||| | |||| | | || | | ||||| | || | ||||| || ||
Sbjct 55612 TC-TGCGCCTCAAGGATG--GCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCG-AC-C 55666
Query 146850 TTTATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCG 146904
||| || ||||| ||||||||||| ||||| || | ||||| ||||
Sbjct 55667 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCG--CCGTAACAGTCG 55724
Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964
|||||||| ||| |||||||| | || | ||| || |||| || || |
Sbjct 55725 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 55784
Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024
| ||| || | ||| || ||||||||| | || | | ||||| || | | |||||
Sbjct 55785 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 55844
Query 147025 GAGCCCATGTTGCGTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCAC 147083
| || || | | | ||| | ||||| ||| | | || | ||||| ||||| |
Sbjct 55845 TTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAG 55903
Query 147084 GTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTT 147140
||| ||||| || || |||| |||||||| || ||||| | ||| | ||||
Sbjct 55904 GTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTT 55963
Query 147141 ATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGC---CGTTGTA 147194
|||||||| || | ||| | |||| ||| ||| || |||||| || ||||
Sbjct 55964 GTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTA 56023
Query 147195 TTGAGC-------GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAA 147247
|||| | | || || ||| | || |||| ||||| ||| || ||||
Sbjct 56024 -GGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAA 56082
Query 147248 TCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCAT 147306
||| ||| || || || | ||| | ||||||||| |||||| ||| ||||| || ||
Sbjct 56083 TCATGGCGCACGTCTTG-AGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCAT--AT 56139
Query 147307 TG--CAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGC 147364
| ||||| |||||| ||| ||||| || ||||| || ||||| |||||
Sbjct 56140 CGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCG 56199
Query 147365 TGGCGTGCGTGAA---CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAA 147421
||| || ||||| | ||| | || |||||| | ||||| || || ||| | ||
Sbjct 56200 AGGCATGGGTGAACAGCTTGCTC-GA--CATCAAGTTGTACGTCTCGATAACGCGCTCAA 56256
Query 147422 CGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAA 147481
||| || || |||| | | ||||| ||||| | |||||| || || | || ||||
Sbjct 56257 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 56316
Query 147482 TCACGTCATTGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGT 147541
|| | ||| || || | || || | || || ||||| || ||||| | ||
Sbjct 56317 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGT 56376
Query 147542 AGTCGTAGTCCCTGTTGT 147559
||| | |||| | || ||
Sbjct 56377 AGTTGAAGTCACGGTCGT 56394
>seq137
Length=159453
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||||| || || || ||||| ||| |
Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || || ||| ||||||| |||||||| ||||| ||
Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | | ||| ||
Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 53187
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 53186 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 53139
>seq126
Length=166795
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || |||||| |||||
Sbjct 82593 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 82534
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 82533 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 82474
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||||| ||| || |||| ||| | || || || ||||| || || || ||
Sbjct 82473 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 82415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475489762437680
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