Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 156 4e-33 seq298 132 5e-26 seq137 118 1e-21 seq126 93.3 4e-14 >seq1 Length=623116 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||||| || | |||||||| || ||||| ||||||||| Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || || |||||||| ||| |||| | |||||||| || ||||| Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||||| ||||| ||| ||| |||| | |||||| Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGT-CGATGGTATCCGAAGACTCGAC 264774 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||||||||| || || ||||||||||| Sbjct 264773 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| Sbjct 265180 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 265121 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || |||||| |||| | || ||||| || ||||| Sbjct 265120 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 265061 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | | ||||||| Sbjct 265060 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 265001 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||| || || || ||||| ||||| Sbjct 265000 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || ||||| |||| | |||||| ||| || ||||| || ||| Sbjct 264694 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 264635 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| |||||||| || |||||||||||| || || |||| Sbjct 264634 GCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 264575 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||| || | ||| || |||| || | || || ||||| Sbjct 264574 ACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 264522 >seq298 Length=101239 Score = 132 bits (146), Expect = 5e-26 Identities = 1000/1578 (63%), Gaps = 100/1578 (6%) Strand=Plus/Plus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || || ||| |||||| || | | ||||| ||||| |||||||| ||||||||||| Sbjct 54861 TCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGG 54920 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | | || | |||| |||| | || ||||| |||||||||| || || ||||||| Sbjct 54921 CGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAA 54980 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216 || | || || |||||| || || |||| | ||| | |||||||| | ||| || Sbjct 54981 GTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTG-AT 55039 Query 146217 CT----TTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 || |||| ||| ||| | ||| | | || | ||| | || | | Sbjct 55040 CTGCTCTTTCAAAGAGT----CCCAGTCCCAGA---GGTCAGAGGGCTTGACGTCCCACA 55092 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330 ||||||| || | | | || | |||||||| | |||||||| || | || Sbjct 55093 TGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCT--TCGTACGAGGAGTAGGTGCC 55150 Query 146331 GTCGATCTTGGCCAGTTCGCAG--CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCG 146388 || || |||| | |||| | | | || || | ||| |||||||| | Sbjct 55151 TTCTTCCTGCGCCAACTGGCAGGACATGGT--GAGGGCGGCGTGGTAGATGGTCTCGAAG 55208 Query 146389 ATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA--- 146445 ||| | | ||||| | | || || | ||| |||| || | | || || Sbjct 55209 ATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCAT---GCGCAGGGCAAGG 55265 Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT- 146504 || || || || || ||||| | |||| ||| | |||||| || | |||| ||||| Sbjct 55266 AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTA 55325 Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564 || | || | | ||| ||||||||| ||| |||||| |||| | || || ||||| Sbjct 55326 CGGGCCTCCTGAACAGGG-TAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGAC 55384 Query 146565 AATTT--------TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACG 146616 || | |||| ||| ||| | | | ||||| || || ||| || | Sbjct 55385 AACCTGGGTGACCTCGTGCAAC--TTCTGGAAGTCATAG----GTGCCTTCGTTGTA--G 55436 Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCG 146676 | ||| | || | ||| | ||| |||| ||| || |||||| ||| || | || Sbjct 55437 TCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATC--AGGCG 55494 Query 146677 C--AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttttt 146734 | | |||| | || || | ||| |||||| || |||| | || | || || | Sbjct 55495 CCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCT 55554 Query 146735 GGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCG 146790 |||| || ||| |||| || ||||||||| |||||| | ||| |||| | || Sbjct 55555 GGTTGCT---CTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 55611 Query 146791 ACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAG 146849 | | | ||| | |||| | | || | | ||||| | || | ||||| || || Sbjct 55612 TC-TGCGCCTCAAGGATG--GCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCG-AC-C 55666 Query 146850 TTTATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCG 146904 ||| || ||||| ||||||||||| ||||| || | ||||| |||| Sbjct 55667 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCG--CCGTAACAGTCG 55724 Query 146905 AGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGT 146964 |||||||| ||| |||||||| | || | ||| || |||| || || | Sbjct 55725 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 55784 Query 146965 TCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCG 147024 | ||| || | ||| || ||||||||| | || | | ||||| || | | ||||| Sbjct 55785 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 55844 Query 147025 GAGCCCATGTTGCGTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCAC 147083 | || || | | | ||| | ||||| ||| | | || | ||||| ||||| | Sbjct 55845 TTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAG 55903 Query 147084 GTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTT 147140 ||| ||||| || || |||| |||||||| || ||||| | ||| | |||| Sbjct 55904 GTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTT 55963 Query 147141 ATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGC---CGTTGTA 147194 |||||||| || | ||| | |||| ||| ||| || |||||| || |||| Sbjct 55964 GTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTA 56023 Query 147195 TTGAGC-------GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAA 147247 |||| | | || || ||| | || |||| ||||| ||| || |||| Sbjct 56024 -GGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAA 56082 Query 147248 TCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCAT 147306 ||| ||| || || || | ||| | ||||||||| |||||| ||| ||||| || || Sbjct 56083 TCATGGCGCACGTCTTG-AGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCAT--AT 56139 Query 147307 TG--CAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGC 147364 | ||||| |||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 56140 CGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCG 56199 Query 147365 TGGCGTGCGTGAA---CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAA 147421 ||| || ||||| | ||| | || |||||| | ||||| || || ||| | || Sbjct 56200 AGGCATGGGTGAACAGCTTGCTC-GA--CATCAAGTTGTACGTCTCGATAACGCGCTCAA 56256 Query 147422 CGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAA 147481 ||| || || |||| | | ||||| ||||| | |||||| || || | || |||| Sbjct 56257 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 56316 Query 147482 TCACGTCATTGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGT 147541 || | ||| || || | || || | || || ||||| || ||||| | || Sbjct 56317 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGT 56376 Query 147542 AGTCGTAGTCCCTGTTGT 147559 ||| | |||| | || || Sbjct 56377 AGTTGAAGTCACGGTCGT 56394 >seq137 Length=159453 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 53366 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 53307 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 53306 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 53247 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 53246 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 53187 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 53186 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 53139 >seq126 Length=166795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || |||||| ||||| Sbjct 82593 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 82534 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 82533 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 82474 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||||| ||| || |||| ||| | || || || ||||| || || || || Sbjct 82473 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 82415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489762437680