Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq298 149 8e-31 seq653 105 8e-18 >seq298 Length=101239 Score = 149 bits (164), Expect = 8e-31 Identities = 953/1508 (63%), Gaps = 69/1508 (5%) Strand=Plus/Plus Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 |||||| || ||||| || ||||| ||| | | | |||||||||| ||||| || Sbjct 54887 ATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGG 54946 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 || |||||||| ||||| |||| || || | ||| || ||||||||||| || | Sbjct 54947 TTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAAC 55006 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042 ||| || |||||||||| || | | | || | || || | | ||||||||| | Sbjct 55007 GAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCA 55066 Query 116043 GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGA 116102 | | | || | |||||||| || ||||||| || || | ||| | || || Sbjct 55067 GAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGA 55126 Query 116103 TCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGC 116162 || || | | || | ||| || ||| |||||| | | || | |||||| Sbjct 55127 GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGC 55186 Query 116163 TGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG-TCGGAATCAA 116221 ||||| || || ||||| || || ||| ||| || |||| | | || Sbjct 55187 GGCGTGGTAGATGGTCTCGAAGAT------CTTC-TTGTTGAGGTCTCGAGCTTCAGCAG 55239 Query 116222 ACGCGAGACGGCA----CA---AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || ||| | |||| || || || |||| || || || ||||| ||||| || Sbjct 55240 ACTCGA-AGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCG 55298 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 116334 || |||||||| | ||| || || || || || || || || || || Sbjct 55299 ATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCA 55358 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || | ||| || | || | |||||||| |||| || || | ||| | | | ||| Sbjct 55359 ATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCA 55418 Query 116395 AAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448 | ||| |||| ||| || | | || ||||| | || ||||| || Sbjct 55419 TAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTG 55472 Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508 || || | |||||| | | |||||| || ||||| || || | || || || Sbjct 55473 CAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTG 55532 Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATA 116568 ||||| || | |||||| || || ||| ||| || |||||||| ||||| Sbjct 55533 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATG 55592 Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGG 116627 | || | ||||||||||| || | || || || || | ||| | | || | | || | Sbjct 55593 AAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTG 55652 Query 116628 CACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAA 116681 ||| ||| || |||| |||| ||||||||| ||| | |||||||| Sbjct 55653 ----ATGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAA 55705 Query 116682 CTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGC-CTTATCTGGACAGAAGAGAGACCA 116738 ||| || || |||| || | ||| || || || || | ||||| | ||||| ||| Sbjct 55706 CTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAGTCCA 55762 Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798 | ||| || ||| || | |||||||||||| || |||||||| || || ||| || Sbjct 55763 GTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAG 55822 Query 116799 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858 ||| || || | || || | || || || || | || | || || | || Sbjct 55823 ATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGAC 55882 Query 116859 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGC 116912 ||| |||||||| || || ||||| | |||| | || | |||| ||| | Sbjct 55883 ATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG---TTACCGCC 55939 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 |||| ||||| | || || ||| || || || ||||| || | || ||| | || Sbjct 55940 TTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGA 55999 Query 116973 TTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCG-TGGATGTGCAT 117029 || || || ||| ||| || ||| | ||| | || || |||| || | Sbjct 56000 GGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAAC-GAATGCGATGGACGTTGAG 56056 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| || || || ||| ||| || || |||||| | |||| || ||||||| || Sbjct 56057 ACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCC 56116 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTG 117148 ||||| ||||| |||| | ||| ||||||||| |||| ||| ||||| || | Sbjct 56117 TTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGG 56175 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATC 117206 | || |||||||| || || || | || ||| ||||| | |||| |||||| | Sbjct 56176 TGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC--AGCTTGCTCGACATCAAGTT 56233 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| ||||| | || || || || || ||| || | | ||| ||||||| Sbjct 56234 GTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAAT 56293 Query 117267 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAA 117326 ||||| ||| || | || | | ||||||| | | ||||||| | ||||||| Sbjct 56294 CATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAA 56353 Query 117327 GGTCTTGA 117334 |||||||| Sbjct 56354 GGTCTTGA 56361 >seq653 Length=48578 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || ||||| || |||||||||||||| |||||| ||| || Sbjct 5773 GCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCA 5832 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||| || || | ||| | || ||||||||||| Sbjct 5833 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATG 5892 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCT 127670 ||||| ||| ||||| || | ||||||| Sbjct 5893 CCCTCAACAGCAGCGAAGGCGACAAGACGCT 5923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492958964120