Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq298 149 8e-31
seq653 105 8e-18
>seq298
Length=101239
Score = 149 bits (164), Expect = 8e-31
Identities = 953/1508 (63%), Gaps = 69/1508 (5%)
Strand=Plus/Plus
Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922
|||||| || ||||| || ||||| ||| | | | |||||||||| ||||| ||
Sbjct 54887 ATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGG 54946
Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982
|| |||||||| ||||| |||| || || | ||| || ||||||||||| || |
Sbjct 54947 TTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAAC 55006
Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042
||| || |||||||||| || | | | || | || || | | ||||||||| |
Sbjct 55007 GAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCA 55066
Query 116043 GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGA 116102
| | | || | |||||||| || ||||||| || || | ||| | || ||
Sbjct 55067 GAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGA 55126
Query 116103 TCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGC 116162
|| || | | || | ||| || ||| |||||| | | || | ||||||
Sbjct 55127 GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGC 55186
Query 116163 TGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG-TCGGAATCAA 116221
||||| || || ||||| || || ||| ||| || |||| | | ||
Sbjct 55187 GGCGTGGTAGATGGTCTCGAAGAT------CTTC-TTGTTGAGGTCTCGAGCTTCAGCAG 55239
Query 116222 ACGCGAGACGGCA----CA---AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274
|| ||| | |||| || || || |||| || || || ||||| ||||| ||
Sbjct 55240 ACTCGA-AGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCG 55298
Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 116334
|| |||||||| | ||| || || || || || || || || || ||
Sbjct 55299 ATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCA 55358
Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394
|| | ||| || | || | |||||||| |||| || || | ||| | | | |||
Sbjct 55359 ATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCA 55418
Query 116395 AAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448
| ||| |||| ||| || | | || ||||| | || ||||| ||
Sbjct 55419 TAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTG 55472
Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508
|| || | |||||| | | |||||| || ||||| || || | || || ||
Sbjct 55473 CAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTG 55532
Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATA 116568
||||| || | |||||| || || ||| ||| || |||||||| |||||
Sbjct 55533 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATG 55592
Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGG 116627
| || | ||||||||||| || | || || || || | ||| | | || | | || |
Sbjct 55593 AAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTG 55652
Query 116628 CACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTCAAA 116681
||| ||| || |||| |||| ||||||||| ||| | ||||||||
Sbjct 55653 ----ATGGTCTTG---CGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAA 55705
Query 116682 CTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGC-CTTATCTGGACAGAAGAGAGACCA 116738
||| || || |||| || | ||| || || || || | ||||| | ||||| |||
Sbjct 55706 CTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAGTCCA 55762
Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798
| ||| || ||| || | |||||||||||| || |||||||| || || ||| ||
Sbjct 55763 GTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAG 55822
Query 116799 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858
||| || || | || || | || || || || | || | || || | ||
Sbjct 55823 ATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGAC 55882
Query 116859 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGC 116912
||| |||||||| || || ||||| | |||| | || | |||| ||| |
Sbjct 55883 ATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG---TTACCGCC 55939
Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972
|||| ||||| | || || ||| || || || ||||| || | || ||| | ||
Sbjct 55940 TTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGA 55999
Query 116973 TTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCG-TGGATGTGCAT 117029
|| || || ||| ||| || ||| | ||| | || || |||| || |
Sbjct 56000 GGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAAC-GAATGCGATGGACGTTGAG 56056
Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089
||| || || || ||| ||| || || |||||| | |||| || ||||||| ||
Sbjct 56057 ACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCC 56116
Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTG 117148
||||| ||||| |||| | ||| ||||||||| |||| ||| ||||| || |
Sbjct 56117 TTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGG 56175
Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATC 117206
| || |||||||| || || || | || ||| ||||| | |||| |||||| |
Sbjct 56176 TGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC--AGCTTGCTCGACATCAAGTT 56233
Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266
||| ||||| | || || || || || ||| || | | ||| |||||||
Sbjct 56234 GTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAAT 56293
Query 117267 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAA 117326
||||| ||| || | || | | ||||||| | | ||||||| | |||||||
Sbjct 56294 CATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAA 56353
Query 117327 GGTCTTGA 117334
||||||||
Sbjct 56354 GGTCTTGA 56361
>seq653
Length=48578
Score = 105 bits (116), Expect = 8e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| || || ||||| || |||||||||||||| |||||| ||| ||
Sbjct 5773 GCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCA 5832
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | ||| || || | ||| | || |||||||||||
Sbjct 5833 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATG 5892
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCT 127670
||||| ||| ||||| || | |||||||
Sbjct 5893 CCCTCAACAGCAGCGAAGGCGACAAGACGCT 5923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613492958964120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |