Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq653 158 2e-33 seq298 138 2e-27 >seq653 Length=48578 Score = 158 bits (174), Expect = 2e-33 Identities = 356/522 (68%), Gaps = 15/522 (3%) Strand=Plus/Plus Query 159628 CTTCTTGTATT--GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATT 159685 ||||| ||| | ||||||| |||||| || |||||||||||||| | | ||| || Sbjct 5478 CTTCTGGTAATCGGCGACACG--CTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 5535 Query 159686 GATTCCATGAACCCGAATGGGTT-CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGC 159744 ||||| || | || || || ||| || || ||| ||| | ||||| | | Sbjct 5536 TTCTCCATAAAGTCAAAGGGATTGCTTGACTTG-TAGACCTTTTCATTGCCGAGGGTAAC 5594 Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCA 159803 ||||| | ||| ||||||||||| ||||| || | ||| | | | || ||||| | Sbjct 5595 CAGCAGACGGTCGGCCACAAATTCAATGTA-CTGCTTCATGAGGTTGGAATTCATCCCGA 5653 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 | || | ||| || || || | || ||||||| |||||||| ||| || ||| | Sbjct 5654 GGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAA 5713 Query 159864 CAATCTGCGAGAC-ACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 || | | || || | | | | ||| | | | |||| | | || ||| Sbjct 5714 TGATGTCCCGGATGACCTGCTTGCTGGGGCG-GTGCTTCAGGTGGGAGT---AGAGCAGG 5769 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| ||| ||||||||| ||||| |||||||||| || ||||| | | | ||| Sbjct 5770 CAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGG 5829 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| |||||| ||||||||||| |||| |||||| |||||| || ||| Sbjct 5830 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAG 5889 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| || || || || || || || | || | | |||| || || ||| | | Sbjct 5890 ATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTG 5949 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||||| | |||||| || |||||| ||||| ||||| || Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTTC-TTGCGAATGCAGGG 5990 >seq298 Length=101239 Score = 138 bits (152), Expect = 2e-27 Identities = 449/682 (66%), Gaps = 13/682 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACAT 203895 ||||| ||||| |||||||| |||| | | |||| | || | | ||| |||||||| Sbjct 54537 TCTTGATCCACTGTGAACTGGATGGGGGCAGCAGCAG-CTTGAGTACGCAGGTAGTACAT 54595 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || ||| || ||| || | ||||||| | | |||| || | | Sbjct 54596 TCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTGATCTTGCCCATGGT 54655 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || |||||||||||| || || || ||||||||| |||||||| || || | Sbjct 54656 CGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATG-AAGGCGCCACGGTCGG 54714 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| | | | ||| ||| ||||||||||||||||||||| ||| | | || Sbjct 54715 CAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGA 54774 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | ||| | | | | || || || ||||| || || || || | | || Sbjct 54775 CCTCGGCAGGGATGT-TGGGGATGTTTTGAATGGAGCCATTCTCAGCAATGATGCGGTTC 54833 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||||| |||| | || || ||| | || ||| |||| | Sbjct 54834 TTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAGCCAGGGATTGACG 54893 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | || || | || | | | |||| |||| | |||||||| Sbjct 54894 ACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAG 54953 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||||| || ||||||||||| || | |||||| Sbjct 54954 CACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGA 55013 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||| || |||| | | || |||| | |||| |||| |||||| | | Sbjct 55014 CTGTTGCGGACGCCGTGCTGCTTGA-TCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTC 55072 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 | ||| || ||| ||||||||||| |||| | || || | || ||| ||| | Sbjct 55073 AGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTC 55132 Query 204433 GTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 ||||| ||| ||| || || || | |||| || ||| || || | |||| Sbjct 55133 GTACG-AGGAGTAGG-TGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCG 55190 Query 204491 TAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||| ||||||| Sbjct 55191 TGGTAGATGGTCTCGAAGATCT 55212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136742459920