Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq653 163 3e-35
seq137 127 2e-24
seq1 118 1e-21
seq126 102 8e-17
>seq653
Length=48578
Score = 163 bits (180), Expect = 3e-35
Identities = 350/515 (68%), Gaps = 10/515 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| |||||| || || || ||| | || |||||||| || || || || || |
Sbjct 5466 CATGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACC 5525
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
| ||| ||| | |||||| || ||||| ||| || |||||| ||| ||||
Sbjct 5526 AAGGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCC 5585
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| ||| || ||||| | ||||||||| || || ||||| ||| |||| | | |
Sbjct 5586 GAG--GGTA-ACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGA 5642
Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
||| | || || |||| ||| ||||| || |||||||| || ||||| || ||
Sbjct 5643 ATTCATCCCGAGGAGACCGCAG-GGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGA 5701
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| |||||| | ||| |||| | | | | ||| || || ||| || || |
Sbjct 5702 CGGCGTCGACAATGATGTCCCGGATGACCTGCTTGCTGGGGCGGTGCTTCAGGTGGGAGT 5761
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | || ||| ||||| ||| |||| || ||||| | || |||||||| ||| ||
Sbjct 5762 AGAGCAGGCAGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGA 5821
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| |||| ||| |||||||| || || || ||||||||||| |||| || || || |
Sbjct 5822 AGGTCAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGG 5881
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCT 133065
| ||||||| |||||| || || ||||| || || || |||| |||| |||| ||||
Sbjct 5882 AGAAGAAGATGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTC- 5940
Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| | | |||||| || ||||| ||||||||
Sbjct 5941 TGGTCGTTGATCCACTTGAGGGCCCAGTCGGCCTT 5975
Score = 154 bits (170), Expect = 1e-32
Identities = 200/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || |||||||| ||||| | || ||||| | ||| ||||| ||| || ||
Sbjct 6098 GTACGTATCGATGAGAAGAGAATAGGTCTCGGAGTGGATGTTTTCCATCATGATCTGGAA 6157
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| ||||||||| ||||| ||||| ||| || || ||||| ||
Sbjct 6158 GCCGTAGAAGCAACGCGCCTCGGGGACCTGGACTTCACCGCTGAAGCGTTCAACCAGGTT 6217
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || ||||| ||| ||||| ||||| || | ||| ||||||
Sbjct 6218 CTCGTTGACAATACCGTCCGAGGCAGCGAAGAAGGCGAGGATGTGAGAGATGAAGAACTT 6277
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| |||||| | | | ||||||| | ||||||||||| ||| | ||||||
Sbjct 6278 CTCGTCGTCGTTAATCTTGTTATTCCAGTCGTGAAGGTCCTTGGACAAGTCAATCTCCTC 6337
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || ||||||||||| || ||||||||
Sbjct 6338 GGCGGTCCAGAATGACGCCTCGGCCTTCTTGTACAT 6373
>seq137
Length=159453
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 53140 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 53199
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 53200 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 53259
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| ||||| || |||| |||||||| ||||||||||
Sbjct 53260 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 53319
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||||||||
Sbjct 53320 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 53354
>seq1
Length=623116
Score = 118 bits (130), Expect = 1e-21
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || ||||| || ||||| | || |||||| | |
Sbjct 264954 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 265013
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | | |||| || |||| ||||| ||||| ||||| | ||||
Sbjct 265014 GACACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACC 265071
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | ||| ||||| ||| |||| || | || ||||| ||| ||||
Sbjct 265072 AGCAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACA 265131
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| |||||||||| |||||||| |||
Sbjct 265132 ACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGT 265169
Score = 113 bits (124), Expect = 5e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| || || |||||||| |||| || ||| || |||| | | | | | | ||
Sbjct 264520 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 264579
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| || | ||||| ||||| || || ||||||| ||||| || |||| ||| ||||
Sbjct 264580 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 264639
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || || | |||||||||| |||||||||||||||||||||| | || || |
Sbjct 264640 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 264699
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
| | || || ||| || | || ||
Sbjct 264700 ACCTCGTCCTTCGTCTGCGTGGTGG 264724
>seq126
Length=166795
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| |||| || ||| || | |||| |
Sbjct 82415 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 82474
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 82475 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 82534
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 82535 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 82594
Query 38433 G 38433
|
Sbjct 82595 G 82595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500161189738880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |