Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq105 345 5e-90 seq24 113 6e-20 >seq105 Length=180915 Score = 345 bits (382), Expect = 5e-90 Identities = 958/1466 (65%), Gaps = 30/1466 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||| || || || Sbjct 97619 TCATCCTCGTCCTTGTACTTCTCAGCCTCGGAAAGCATACGCTCGATGTCCTCCTTGGAC 97678 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| ||||| |||||| | ||| || || | | |||| || || Sbjct 97679 AGGCGGCCCTTGTCATTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCGACA 97738 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || || || || ||||| | || | || || || | Sbjct 97739 GCGGAGACGTTCATGATACCGTTGGCGTCGACGTCGAAGGTGACCTCGATCTGAGGAACA 97798 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | || || | || || | |||| ||| | Sbjct 97799 CCTCGGGGAGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 97858 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || ||| ||||| || || || | || || |||| || || || | Sbjct 97859 GTGCGCTGACGCTCACCCTCGTACACCTGGATGAGGACACCAGGCTGGTTGTCGGAGAAC 97918 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 97919 GTAGAGAAGACCTCAGACTTCTTGGTGGGGATAGTGGTGTTGCGGGGGATGAGCTTGGTC 97978 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| ||| |||| || ||||| ||||| | ||||| | || || | Sbjct 97979 ATCATGCCACCAGCAGTCTCGATACCGAGAGAGAGAGGAGCGACGTCGAGAAGCAAGA-- 98036 Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037 ||| | || || | ||| |||| | | |||||| || || || | Sbjct 98037 TCTCG------TTGGTGCTCTTGGAGGAAGTGTCACCAGACAGGATGGCAGCCTGAACAG 98090 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||| ||||| || | || || | || || ||||| | Sbjct 98091 CGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 98150 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || || | | | || || ||||| || || || |||||||||| |||| Sbjct 98151 AGTAGTCGGAAATGAGCTTCTGGATGCGGGGGATACGGGTGGAACCACCGACCAGGACGA 98210 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || | || ||||||||||| | || ||| ||||| || | | Sbjct 98211 TCTCGTGAACCTGGGACTTATCGATCTTGGCATCAGTAAGAACGCGGTCGACGGGCTGGA 98270 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 | ||||||| |||| || || ||||| || || |||||||| ||||| || | Sbjct 98271 TGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCGAAGCGAGCACGGGTGATGGAGGTGT 98330 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || ||||| ||||||| || || || | ||| || | Sbjct 98331 AGAAGTCAATACCCTCGAAGAGAGAGTCAATCTCAATGGAGGTCTGGGCAGACGAGGACA 98390 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || ||||| || || || || | ||||| || ||||| | ||| || Sbjct 98391 GGGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGGCGACGCAGAGCACGAGCGTTGGAGG 98450 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | | || ||||| || || || || ||||| | |||||| | ||| | | Sbjct 98451 ACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGGCGGTTGT 98510 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 98511 CGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCT 98570 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | ||||| | | | |||||||| || ||||||||||| ||||| ||||| || |||| Sbjct 98571 CCTCAATCGTCAGGAGGGAAACATCGAAGGTACCACCACCAAGGTCGAAAATCAGAACGT 98630 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || ||||| || |||||||| || || || || || || || || | Sbjct 98631 TGCGCTCACCCTCAGCCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCGGTGGGCTCGT 98690 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || |||||||| |||||| || ||||| | ||||| || || || || || | Sbjct 98691 TGATGATACGAAGGACGTTCAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGCT 98750 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| ||||| || | ||| |||| ||||| | ||| || | Sbjct 98751 GGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTAGTGACCTGGCCACCAAGGT 98810 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || ||| | || ||| ||| |||||||| | || ||||| || | | | Sbjct 98811 AGGCCTCAGCGGTCTCGCGCATCTTGACGAGAACCATGGCGGAGATCTCCTCGGGAGTGA 98870 Query 7818 ACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---G 7873 | || | ||| || || || || ||||| ||||| |||| || || |||| | Sbjct 98871 A-GGTCTTGTTCTCGCCCTTGAACTCAACCTCAATGTTGGGCTT----GC--CACCCTTG 98923 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || ||||| | | ||| ||||| ||| | ||||||| || ||||| Sbjct 98924 TCAATGACCTTGAAGGGGAAATGCTTCATGTCGGCCTGGACCTCGGAATCGCTGAACTTG 98983 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| |||||||| || || || || ||||| | ||||||||||| |||||| Sbjct 98984 CGACCGATCAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTC 99043 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTC 8019 || || || || || || || || || Sbjct 99044 TTGGCGGCATCACCAATCAGGCGCTC 99069 >seq24 Length=312963 Score = 113 bits (124), Expect = 6e-20 Identities = 223/330 (68%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||||| || || || |||| ||| Sbjct 180778 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCAGTACCTCGAAGACACCC 180719 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | || ||||| || ||||||||||| ||||| | | || | Sbjct 180718 TGGTCGATGGAAAGGAGAGAGACATCGAAAGTACCACCACCAAGGTCGTAGACGATGA-- 180661 Query 7577 TTCGTATCGTCGTCTTTGT---TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | | || ||| |||| || || |||||||||||||| || || || || Sbjct 180660 ----TCTGGCGCTCCTTGCCAGTCTTGTCAAGGCCGTACGCGATAGCGGCGGCAGTGGGC 180605 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||| || || ||| || |||||||| | ||||| || || || || Sbjct 180604 TCGTTGACAATGCGGAGGACGTTGAGACCAGCAATGACACCGGCATCCTTGGTGGCCTGG 180545 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| || || || ||||| |||| ||||| ||||| ||| Sbjct 180544 CGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTGACGACGGCGTGGGTGACCTTCTTGCCG 180485 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTG 7783 || || || |||| || ||||| ||| Sbjct 180484 AGGTAGTTCTCGGCGACCTCCTTCATCTTG 180455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118056979880