Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq105 345 5e-90
seq24 113 6e-20
>seq105
Length=180915
Score = 345 bits (382), Expect = 5e-90
Identities = 958/1466 (65%), Gaps = 30/1466 (2%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| || || || ||||| || || || | ||| || ||||| || || ||
Sbjct 97619 TCATCCTCGTCCTTGTACTTCTCAGCCTCGGAAAGCATACGCTCGATGTCCTCCTTGGAC 97678
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| | ||||| ||||| ||||| |||||| | ||| || || | | |||| || ||
Sbjct 97679 AGGCGGCCCTTGTCATTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCGACA 97738
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| || |||| ||||| || || || || ||||| | || | || || || |
Sbjct 97739 GCGGAGACGTTCATGATACCGTTGGCGTCGACGTCGAAGGTGACCTCGATCTGAGGAACA 97798
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || |||| ||||| || || | || || | || || | |||| ||| |
Sbjct 97799 CCTCGGGGAGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 97858
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| || ||| ||||| || || || | || || |||| || || || |
Sbjct 97859 GTGCGCTGACGCTCACCCTCGTACACCTGGATGAGGACACCAGGCTGGTTGTCGGAGAAC 97918
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | ||||| | || || || || || | || || | | ||||
Sbjct 97919 GTAGAGAAGACCTCAGACTTCTTGGTGGGGATAGTGGTGTTGCGGGGGATGAGCTTGGTC 97978
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|| || ||||| ||| |||| || ||||| ||||| | ||||| | || || |
Sbjct 97979 ATCATGCCACCAGCAGTCTCGATACCGAGAGAGAGAGGAGCGACGTCGAGAAGCAAGA-- 98036
Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037
||| | || || | ||| |||| | | |||||| || || || |
Sbjct 98037 TCTCG------TTGGTGCTCTTGGAGGAAGTGTCACCAGACAGGATGGCAGCCTGAACAG 98090
Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097
|| ||||| || || |||||||| ||||| || | || || | || || ||||| |
Sbjct 98091 CGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 98150
Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157
| || || || | | | || || ||||| || || || |||||||||| ||||
Sbjct 98151 AGTAGTCGGAAATGAGCTTCTGGATGCGGGGGATACGGGTGGAACCACCGACCAGGACGA 98210
Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217
| || | || | || ||||||||||| | || ||| ||||| || | |
Sbjct 98211 TCTCGTGAACCTGGGACTTATCGATCTTGGCATCAGTAAGAACGCGGTCGACGGGCTGGA 98270
Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277
| ||||||| |||| || || ||||| || || |||||||| ||||| || |
Sbjct 98271 TGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCGAAGCGAGCACGGGTGATGGAGGTGT 98330
Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337
|||| |||| || ||| | | || ||||| ||||||| || || || | ||| || |
Sbjct 98331 AGAAGTCAATACCCTCGAAGAGAGAGTCAATCTCAATGGAGGTCTGGGCAGACGAGGACA 98390
Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397
|| ||||| || ||||| || || || || | ||||| || ||||| | ||| ||
Sbjct 98391 GGGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGGCGACGCAGAGCACGAGCGTTGGAGG 98450
Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457
| | || ||||| || || || || ||||| | |||||| | ||| | |
Sbjct 98451 ACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGGCGGTTGT 98510
Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517
|||| || |||||||||||||| || || || ||||| | ||||| || ||||||||
Sbjct 98511 CGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCT 98570
Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577
| ||||| | | | |||||||| || ||||||||||| ||||| ||||| || ||||
Sbjct 98571 CCTCAATCGTCAGGAGGGAAACATCGAAGGTACCACCACCAAGGTCGAAAATCAGAACGT 98630
Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
| || | || ||||| || |||||||| || || || || || || || || |
Sbjct 98631 TGCGCTCACCCTCAGCCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCGGTGGGCTCGT 98690
Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697
| || |||||||| |||||| || ||||| | ||||| || || || || || |
Sbjct 98691 TGATGATACGAAGGACGTTCAGACCGGCAATGAGACCGGCATCCTTGGTAGCCTGACGCT 98750
Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757
| || ||||| |||||||| ||||| || | ||| |||| ||||| | ||| || |
Sbjct 98751 GGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCGTTAGTGACCTGGCCACCAAGGT 98810
Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817
| | || ||| | || ||| ||| |||||||| | || ||||| || | | |
Sbjct 98811 AGGCCTCAGCGGTCTCGCGCATCTTGACGAGAACCATGGCGGAGATCTCCTCGGGAGTGA 98870
Query 7818 ACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---G 7873
| || | ||| || || || || ||||| ||||| |||| || || |||| |
Sbjct 98871 A-GGTCTTGTTCTCGCCCTTGAACTCAACCTCAATGTTGGGCTT----GC--CACCCTTG 98923
Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933
|| ||||| | | ||| ||||| ||| | ||||||| || |||||
Sbjct 98924 TCAATGACCTTGAAGGGGAAATGCTTCATGTCGGCCTGGACCTCGGAATCGCTGAACTTG 98983
Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993
| ||||| |||||||| || || || || ||||| | ||||||||||| ||||||
Sbjct 98984 CGACCGATCAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTC 99043
Query 7994 TTCGCCGCGTCCCCGATAAGACGTTC 8019
|| || || || || || || || ||
Sbjct 99044 TTGGCGGCATCACCAATCAGGCGCTC 99069
>seq24
Length=312963
Score = 113 bits (124), Expect = 6e-20
Identities = 223/330 (68%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || ||||| || || || |||| |||
Sbjct 180778 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCAGTACCTCGAAGACACCC 180719
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | || ||||| || ||||||||||| ||||| | | || |
Sbjct 180718 TGGTCGATGGAAAGGAGAGAGACATCGAAAGTACCACCACCAAGGTCGTAGACGATGA-- 180661
Query 7577 TTCGTATCGTCGTCTTTGT---TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| | | || ||| |||| || || |||||||||||||| || || || ||
Sbjct 180660 ----TCTGGCGCTCCTTGCCAGTCTTGTCAAGGCCGTACGCGATAGCGGCGGCAGTGGGC 180605
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || | ||| || || ||| || |||||||| | ||||| || || || ||
Sbjct 180604 TCGTTGACAATGCGGAGGACGTTGAGACCAGCAATGACACCGGCATCCTTGGTGGCCTGG 180545
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
|| || ||||| |||||||| || || || ||||| |||| ||||| ||||| |||
Sbjct 180544 CGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTGACGACGGCGTGGGTGACCTTCTTGCCG 180485
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTG 7783
|| || || |||| || ||||| |||
Sbjct 180484 AGGTAGTTCTCGGCGACCTCCTTCATCTTG 180455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635118056979880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |