Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq298 187 3e-42
seq653 131 2e-25
seq160 102 1e-16
>seq298
Length=101239
Score = 187 bits (206), Expect = 3e-42
Identities = 940/1473 (64%), Gaps = 41/1473 (3%)
Strand=Plus/Minus
Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728
||| | ||||| ||| || |||||| | |||||| ||| || | || || ||
Sbjct 56248 GTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTG 56189
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|||||||| || || || ||||| |||| || ||||| | | | ||||||
Sbjct 56188 TTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAG 56129
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || ||| | ||||| |||| ||| |||| || ||| || || ||| ||||
Sbjct 56128 GACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCT 56069
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-A 111906
|| || ||||| | || ||||| | | ||| | ||| || | | || |
Sbjct 56068 GGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACT--GGCTCCTACATCGCGGGCA 56011
Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966
| || || || | ||| | | || ||||| || || || ||| ||| || ||||
Sbjct 56010 CCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCT 55951
Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCAT 112020
|||| |||||| || | |||| || || |||| |||| |||||||| |
Sbjct 55950 ATGTCGACCAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCT 55894
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
||||||| ||| || | |||||||| || | || ||||| || | ||||||| |
Sbjct 55893 GGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCC 55834
Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
| ||||||||| ||| ||| || ||||| || |||||||||||||||||||| |||
Sbjct 55833 GTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGA 55774
Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG- 112199
||| || | ||| ||||| | ||||| || || |||| ||| |||| | ||
Sbjct 55773 AGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGA--CTGTTA 55716
Query 112200 -GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256
|| ||||||||||| || | ||| ||||||||| || || || | | || |
Sbjct 55715 CGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAG 55658
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | | || | || | ||||| | || || || || | || || ||||| || |
Sbjct 55657 ACCAT-CAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAA 55599
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| | ||||| ||||| |||||| |||| ||||| || || ||||| | |||
Sbjct 55598 CCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 55539
Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435
||| || |||||||| || || |||||| | || | | | |||||| ||
Sbjct 55538 CATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGC 55479
Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACA 112493
|| || ||||| || || | || || |||| | || || | | | || ||| ||
Sbjct 55478 CGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACC 55421
Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553
| ||| | | || | ||||| || || | |||| ||| | ||||| |
Sbjct 55420 TATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATC 55361
Query 112554 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613
||||| || ||||| ||| || || ||||| || ||| | || || ||
Sbjct 55360 ATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCC 55301
Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 112672
|| |||||||| ||||| || || || |||| ||| || | || ||| | || ||
Sbjct 55300 ATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGA 55242
Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732
|| | ||||| || |||| | || || ||||| || || |||||||| ||
Sbjct 55241 GTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT 55182
Query 112733 TGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790
| || | | ||||||| ||| || || | || | | || || ||
Sbjct 55181 --CACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCC 55124
Query 112791 CCAGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849
|| | ||| ||||||| | || || | || |||||||| | || || | ||
Sbjct 55123 CCTGTTTC-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTG 55065
Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909
||||||||| || | || || | |||||| || | || | || |||||||| | |
Sbjct 55064 GGACTGGGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGT 55005
Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969
|| || ||||| || || ||| | || || |||| || || || ||||| |||||
Sbjct 55004 TGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACC 54945
Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--- 113026
||||| | |||||||| | | | | ||||| || ||||| | | |||||
Sbjct 54944 TTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCC 54885
Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086
| || |||| | ||||| ||||| || || |||||| | | |||||| | |
Sbjct 54884 CTGGCTTCTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCG 54828
Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATAT 113119
||| | | | ||| ||||||||||| ||
Sbjct 54827 CATCATTGCTGAGAATGGCTCCATTCAAAACAT 54795
>seq653
Length=48578
Score = 131 bits (144), Expect = 2e-25
Identities = 168/226 (74%), Gaps = 8/226 (4%)
Strand=Plus/Minus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 102166
|||||| || |||| ||||| || || ||||| | |||||| | | || |||||
Sbjct 5994 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 5935
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
|| | ||| |||| || |||| || || ||||||||| ||||||||||| ||
Sbjct 5934 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 5878
Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285
| |||| |||| | || | ||||||||||||||| ||||||||||| || || |||||
Sbjct 5877 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 5819
Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| || || |||||||| ||||| ||||| ||| || |||||
Sbjct 5818 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 5773
>seq160
Length=147577
Score = 102 bits (112), Expect = 1e-16
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
|||||| |||||||||||||||| |||||| || || | |||||| | || ||
Sbjct 85504 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85445
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 16181
|| || || | || ||| ||||| || |||||||| || || | | | || ||
Sbjct 85444 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85385
Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
| || |||||| || ||| || ||||| |||| ||| || || ||||||||
Sbjct 85384 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85327
Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
||||| || || ||||||| |||||| || ||||||||||||||
Sbjct 85326 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620727991017040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |