Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq298 187 3e-42 seq653 131 2e-25 seq160 102 1e-16 >seq298 Length=101239 Score = 187 bits (206), Expect = 3e-42 Identities = 940/1473 (64%), Gaps = 41/1473 (3%) Strand=Plus/Minus Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 ||| | ||||| ||| || |||||| | |||||| ||| || | || || || Sbjct 56248 GTTATCGAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTG 56189 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||| || || || ||||| |||| || ||||| | | | |||||| Sbjct 56188 TTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAG 56129 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || ||| | ||||| |||| ||| |||| || ||| || || ||| |||| Sbjct 56128 GACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCT 56069 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-A 111906 || || ||||| | || ||||| | | ||| | ||| || | | || | Sbjct 56068 GGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACT--GGCTCCTACATCGCGGGCA 56011 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || || | ||| | | || ||||| || || || ||| ||| || |||| Sbjct 56010 CCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCT 55951 Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCAT 112020 |||| |||||| || | |||| || || |||| |||| |||||||| | Sbjct 55950 ATGTCGACCAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCT 55894 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| || | |||||||| || | || ||||| || | ||||||| | Sbjct 55893 GGCACGCCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCC 55834 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||||||||| ||| ||| || ||||| || |||||||||||||||||||| ||| Sbjct 55833 GTGCCCGCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGA 55774 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG- 112199 ||| || | ||| ||||| | ||||| || || |||| ||| |||| | || Sbjct 55773 AGAACGGTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGA--CTGTTA 55716 Query 112200 -GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256 || ||||||||||| || | ||| ||||||||| || || || | | || | Sbjct 55715 CGGCGAGGAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAG 55658 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || | | || | || | ||||| | || || || || | || || ||||| || | Sbjct 55657 ACCAT-CAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAA 55599 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||| ||||| |||||| |||| ||||| || || ||||| | ||| Sbjct 55598 CCCCTTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 55539 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 ||| || |||||||| || || |||||| | || | | | |||||| || Sbjct 55538 CATCCGCAGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGC 55479 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACA 112493 || || ||||| || || | || || |||| | || || | | | || ||| || Sbjct 55478 CGTCTGCAACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACC 55421 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | ||| | | || | ||||| || || | |||| ||| | ||||| | Sbjct 55420 TATGACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATC 55361 Query 112554 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 ||||| || ||||| ||| || || ||||| || ||| | || || || Sbjct 55360 ATTGACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCC 55301 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 112672 || |||||||| ||||| || || || |||| ||| || | || ||| | || || Sbjct 55300 ATCGGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGA 55242 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || | ||||| || |||| | || || ||||| || || |||||||| || Sbjct 55241 GTCTGCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT 55182 Query 112733 TGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 | || | | ||||||| ||| || || | || | | || || || Sbjct 55181 --CACCATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCC 55124 Query 112791 CCAGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 || | ||| ||||||| | || || | || |||||||| | || || | || Sbjct 55123 CCTGTTTC-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTG 55065 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 ||||||||| || | || || | |||||| || | || | || |||||||| | | Sbjct 55064 GGACTGGGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGT 55005 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || || ||||| || || ||| | || || |||| || || || ||||| ||||| Sbjct 55004 TGCCCCCATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACC 54945 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--- 113026 ||||| | |||||||| | | | | ||||| || ||||| | | ||||| Sbjct 54944 TTACACCTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCC 54885 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086 | || |||| | ||||| ||||| || || |||||| | | |||||| | | Sbjct 54884 CTGGCTTCTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCG 54828 Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATAT 113119 ||| | | | ||| ||||||||||| || Sbjct 54827 CATCATTGCTGAGAATGGCTCCATTCAAAACAT 54795 >seq653 Length=48578 Score = 131 bits (144), Expect = 2e-25 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 102166 |||||| || |||| ||||| || || ||||| | |||||| | | || ||||| Sbjct 5994 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 5935 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || | ||| |||| || |||| || || ||||||||| ||||||||||| || Sbjct 5934 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 5878 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||| |||| | || | ||||||||||||||| ||||||||||| || || ||||| Sbjct 5877 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 5819 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| || || |||||||| ||||| ||||| ||| || ||||| Sbjct 5818 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 5773 >seq160 Length=147577 Score = 102 bits (112), Expect = 1e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||| |||||||||||||||| |||||| || || | |||||| | || || Sbjct 85504 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85445 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 16181 || || || | || ||| ||||| || |||||||| || || | | | || || Sbjct 85444 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85385 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85384 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85327 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85326 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727991017040