Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq298 194 2e-44 seq653 125 8e-24 >seq298 Length=101239 Score = 194 bits (214), Expect = 2e-44 Identities = 1090/1723 (63%), Gaps = 59/1723 (3%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563 || |||||||| |||||||| ||||| || || ||||| | ||| | ||| || Sbjct 54681 GATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATCTGTACGACGGTACGCT-- 54738 Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623 || ||| ||||| || ||||||||||| ||||| || | || |||| |||| Sbjct 54739 -GGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATG 54797 Query 109624 TTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGA 109680 |||||||| |||||| |||| | | || | | |||||| | | ||||| || Sbjct 54798 TTTTGAATGGAGCCATTCTCAGCAATGA---TGCGGTTCTTCATGCCGTCGGACCACAGT 54854 Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCA 109737 || | || || | ||| ||| || | ||||| || || || ||||| Sbjct 54855 CCCATCTC---GACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCG 54911 Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797 || ||| || |||||||||| | ||||| |||||||| ||||| |||||||| || Sbjct 54912 AGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGA 54971 Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTC 109857 || || | |||| || ||||||||||| || | ||| |||||||| |||| || | | Sbjct 54972 ATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGC 55031 Query 109858 GTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCA 109917 ||| | | |||| || | |||||| || | | || | || | Sbjct 55032 TGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAG------GGCTTGACG 55085 Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977 |||||||| || || || | |||| | | |||| || || | | | ||| Sbjct 55086 TCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAG 55145 Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037 | || || ||| ||||||| | | || || || || || || || ||||| Sbjct 55146 GTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCG 55205 Query 110038 AAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG- 110093 || || | || ||||| |||| || || | |||||||| | | || | Sbjct 55206 AAGATCTTC---TTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCATGCG-CAGGGC 55261 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || ||| |||| || || ||||| || |||||||| ||||||||||| |||||| Sbjct 55262 AAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCT 55321 Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | || || | || ||||| |||| ||| |||| || || | || Sbjct 55322 GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGAC 55381 Query 110214 CACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTT--TTCGTCTCCTTATTG 110271 ||| || |||| || || | || | | | || | || ||||| | | Sbjct 55382 GACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTG--TAGTCA 55439 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 || | |||| || || | ||| || || ||||| || | | ||| || | | | Sbjct 55440 ACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAG 55499 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || || | ||||| || || | |||||| || ||| ||| | ||||||||| || Sbjct 55500 TACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTG 55559 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 ||| |||| || ||||| || |||||| | ||| | || || |||||||| | | Sbjct 55560 CTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCC 55619 Query 110452 TTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCC 110508 | || ||||| | ||| | | || | ||| || || |||| | | ||| || Sbjct 55620 TCAAGGATGGCGTACCACAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTACCCTCG 55676 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTT 110567 ||||||||| |||||| ||||||| |||| ||||| ||| || | || || Sbjct 55677 CGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA-ACAGTCGGCGAGGCCGGA 55735 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || || |||||| | ||| | ||| | || || ||| || ||||||||||| || Sbjct 55736 GCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAG 55795 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 ||||| ||||| | || |||||| || ||| ||| |||| || | || ||||| Sbjct 55796 ATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTT 55855 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 ||| || || | || || | || ||| | |||||| || || || |||| |||| Sbjct 55856 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 55915 Query 110748 GGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801 || || | | || ||| | |||| |||||||| || ||| |||||||| Sbjct 55916 GGCACC---AGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGAC 55972 Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861 | |||||||| | | || | ||| || || || ||| || ||| | | Sbjct 55973 ACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGT 56032 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 || ||||||| |||| | | ||| || || || ||| ||| ||| || || Sbjct 56033 GGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA 56092 Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 | ||| |||| || | || || || || || || || |||| | | | || |||| Sbjct 56093 CGTCT-TGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGC 56151 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | ||||||| || | |||| || || || ||||| || || || | ||||| ||| Sbjct 56152 ACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGA 56211 Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098 |||| |||| |||||| |||||| || |||| || || | | ||| Sbjct 56212 ACAG--CTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA 56269 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158 ||| |||| || || ||||| | ||| | ||| ||| | ||| | ||| ||||| | Sbjct 56270 AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGAT 56329 Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 | ||||| | |||| | |||||||| || |||||| Sbjct 56330 CTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTAT 56372 >seq653 Length=48578 Score = 125 bits (138), Expect = 8e-24 Identities = 155/206 (75%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || ||||| || ||||||||||| ||||| |||| || || Sbjct 5772 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 5831 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGG-CACAAAAACTTCCAGAAAAGAAGA 119613 ||||||||| || | ||||| ||||||||||||| | |||| | || || ||||||| Sbjct 5832 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGC-ACCGGAGAAGAAGA 5890 Query 119614 TGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---G 119669 ||||||| ||| ||||| |||| ||||||| ||| ||| || || || ||| | Sbjct 5891 TGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAA-GTGGACTTCTGGTCGTTG 5949 Query 119670 AACCACTTGAGAGCCCAGTTGGCCTT 119695 | ||||||||| ||||||| |||||| Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTT 5975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962328394600