Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq298 194 2e-44
seq653 125 8e-24
>seq298
Length=101239
Score = 194 bits (214), Expect = 2e-44
Identities = 1090/1723 (63%), Gaps = 59/1723 (3%)
Strand=Plus/Plus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563
|| |||||||| |||||||| ||||| || || ||||| | ||| | ||| ||
Sbjct 54681 GATTGAGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATCTGTACGACGGTACGCT-- 54738
Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623
|| ||| ||||| || ||||||||||| ||||| || | || |||| ||||
Sbjct 54739 -GGGAAATCTCCCACACCGTCTTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATG 54797
Query 109624 TTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGA 109680
|||||||| |||||| |||| | | || | | |||||| | | ||||| ||
Sbjct 54798 TTTTGAATGGAGCCATTCTCAGCAATGA---TGCGGTTCTTCATGCCGTCGGACCACAGT 54854
Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCA 109737
|| | || || | ||| ||| || | ||||| || || || |||||
Sbjct 54855 CCCATCTC---GACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCG 54911
Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797
|| ||| || |||||||||| | ||||| |||||||| ||||| |||||||| ||
Sbjct 54912 AGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGA 54971
Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTC 109857
|| || | |||| || ||||||||||| || | ||| |||||||| |||| || | |
Sbjct 54972 ATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGC 55031
Query 109858 GTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCA 109917
||| | | |||| || | |||||| || | | || | || |
Sbjct 55032 TGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAG------GGCTTGACG 55085
Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977
|||||||| || || || | |||| | | |||| || || | | | |||
Sbjct 55086 TCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAG 55145
Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037
| || || ||| ||||||| | | || || || || || || || |||||
Sbjct 55146 GTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCG 55205
Query 110038 AAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG- 110093
|| || | || ||||| |||| || || | |||||||| | | || |
Sbjct 55206 AAGATCTTC---TTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCATGCG-CAGGGC 55261
Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153
|| ||| |||| || || ||||| || |||||||| ||||||||||| ||||||
Sbjct 55262 AAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCT 55321
Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213
| || || | || ||||| |||| ||| |||| || || | ||
Sbjct 55322 GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAGTTGCGGAC 55381
Query 110214 CACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTT--TTCGTCTCCTTATTG 110271
||| || |||| || || | || | | | || | || ||||| | |
Sbjct 55382 GACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTG--TAGTCA 55439
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
|| | |||| || || | ||| || || ||||| || | | ||| || | | |
Sbjct 55440 ACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAG 55499
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
|| || | ||||| || || | |||||| || ||| ||| | ||||||||| ||
Sbjct 55500 TACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTG 55559
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
||| |||| || ||||| || |||||| | ||| | || || |||||||| | |
Sbjct 55560 CTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCC 55619
Query 110452 TTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCC 110508
| || ||||| | ||| | | || | ||| || || |||| | | ||| ||
Sbjct 55620 TCAAGGATGGCGTACCACAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTACCCTCG 55676
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTT 110567
||||||||| |||||| ||||||| |||| ||||| ||| || | || ||
Sbjct 55677 CGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA-ACAGTCGGCGAGGCCGGA 55735
Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627
|| || |||||| | ||| | ||| | || || ||| || ||||||||||| ||
Sbjct 55736 GCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAG 55795
Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687
||||| ||||| | || |||||| || ||| ||| |||| || | || |||||
Sbjct 55796 ATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTT 55855
Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747
||| || || | || || | || ||| | |||||| || || || |||| ||||
Sbjct 55856 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 55915
Query 110748 GGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801
|| || | | || ||| | |||| |||||||| || ||| ||||||||
Sbjct 55916 GGCACC---AGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGAC 55972
Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861
| |||||||| | | || | ||| || || || ||| || ||| | |
Sbjct 55973 ACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGT 56032
Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921
|| ||||||| |||| | | ||| || || || ||| ||| ||| || ||
Sbjct 56033 GGAACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA 56092
Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
| ||| |||| || | || || || || || || || |||| | | | || ||||
Sbjct 56093 CGTCT-TGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGC 56151
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
| ||||||| || | |||| || || || ||||| || || || | ||||| |||
Sbjct 56152 ACGAAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGA 56211
Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098
|||| |||| |||||| |||||| || |||| || || | | |||
Sbjct 56212 ACAG--CTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA 56269
Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158
||| |||| || || ||||| | ||| | ||| ||| | ||| | ||| ||||| |
Sbjct 56270 AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGAT 56329
Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201
| ||||| | |||| | |||||||| || ||||||
Sbjct 56330 CTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTAT 56372
>seq653
Length=48578
Score = 125 bits (138), Expect = 8e-24
Identities = 155/206 (75%), Gaps = 7/206 (3%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || ||||| || ||||||||||| ||||| |||| || ||
Sbjct 5772 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 5831
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGG-CACAAAAACTTCCAGAAAAGAAGA 119613
||||||||| || | ||||| ||||||||||||| | |||| | || || |||||||
Sbjct 5832 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGC-ACCGGAGAAGAAGA 5890
Query 119614 TGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---G 119669
||||||| ||| ||||| |||| ||||||| ||| ||| || || || ||| |
Sbjct 5891 TGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAA-GTGGACTTCTGGTCGTTG 5949
Query 119670 AACCACTTGAGAGCCCAGTTGGCCTT 119695
| ||||||||| ||||||| ||||||
Sbjct 5950 ATCCACTTGAGGGCCCAGTCGGCCTT 5975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588962328394600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |