Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq298 168 8e-37 seq653 111 2e-19 seq160 98.7 1e-15 >seq298 Length=101239 Score = 168 bits (186), Expect = 8e-37 Identities = 573/873 (66%), Gaps = 35/873 (4%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || |||| ||||| || || |||||| | | |||||| | Sbjct 55449 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 55508 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| || || | |||||| || || || || | ||||| ||||| ||||| | Sbjct 55509 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 55568 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || |||||||| |||||| |||| | |||||||||||||| | || || || Sbjct 55569 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 55628 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 106692 || | ||||| | || | | || | |||| ||| | || | ||||| |||||| Sbjct 55629 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 55684 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 106751 ||| ||| | || ||||||||||| || ||||| ||| || || || || || Sbjct 55685 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 55743 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 ||||| | |||| ||| | ||| || ||| || | ||||||||| || || || | Sbjct 55744 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 55803 Query 106812 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 |||| ||| || |||| ||||| | ||| || |||| || | || ||||| | Sbjct 55804 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 55860 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 106922 | | || |||||||| | || ||| |||||||| |||||||| |||| |||| Sbjct 55861 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 55920 Query 106923 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 || || ||| | || |||| | |||||||| || ||| ||| || || || | Sbjct 55921 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 55977 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 107040 |||| || | | ||| | || || || || ||| ||| || ||| | ||| Sbjct 55978 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 56035 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 | | ||||| || | || || || |||||| ||| || || || ||| Sbjct 56036 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 56095 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | ||||| || | ||| ||||||||||| | ||| |||||||| Sbjct 56096 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 56155 Query 107161 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 |||| || || || || || || || ||||| || || || | || || ||||| Sbjct 56156 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 56213 Query 107220 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 | |||| |||||| || ||| ||||| | || |||| || || || || Sbjct 56214 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 56272 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||| | || |||||||||| ||||| ||| || Sbjct 56273 GCCAACAGCGACACGCATAATCATGTGTTGCGG 56305 >seq653 Length=48578 Score = 111 bits (122), Expect = 2e-19 Identities = 289/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||| Sbjct 5494 ACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAAAG 5553 Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 117114 ||||| | | || | | | || | || ||||| || | |||| Sbjct 5554 GGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCACA 5613 Query 117115 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCG 117174 | |||||||||| ||| | || ||||| |||| |||| || || || || Sbjct 5614 AATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAGCC 5673 Query 117175 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 117234 || || |||| | | |||||||| || || || | |||| | |||| | Sbjct 5674 TCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCTGC 5733 Query 117235 GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCC 117294 | |||| | | || | ||||| |||||| || ||| || || Sbjct 5734 TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTCCT 5793 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || || || || || |||||||| |||||| ||||| ||||||||||| |||||||| Sbjct 5794 TCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCTTG 5853 Query 117355 AACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | |||| | || | |||| || | |||||||||||||| ||||| ||| || || || Sbjct 5854 AGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAGGC 5912 Query 117414 AAAAAGGCGCTCGGCGAA 117431 | ||| |||| ||||| Sbjct 5913 GACAAGACGCTGAGCGAA 5930 >seq160 Length=147577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||| |||||||||||||||| || || || || | ||| || | | || || Sbjct 85504 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85445 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9488 || || || || || ||| ||||| || |||||||| || || | | | || || Sbjct 85444 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85385 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85384 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85327 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85326 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967105070680