Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq298 168 8e-37
seq653 111 2e-19
seq160 98.7 1e-15
>seq298
Length=101239
Score = 168 bits (186), Expect = 8e-37
Identities = 573/873 (66%), Gaps = 35/873 (4%)
Strand=Plus/Plus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| ||||| | || |||| ||||| || || |||||| | | |||||| |
Sbjct 55449 GGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATG 55508
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
||||| || || | |||||| || || || || | ||||| ||||| ||||| |
Sbjct 55509 ATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 55568
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||| || |||||||| |||||| |||| | |||||||||||||| | || || ||
Sbjct 55569 TTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATG 55628
Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 106692
|| | ||||| | || | | || | |||| ||| | || | ||||| ||||||
Sbjct 55629 GCGTACCACAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCGCGCTCGTA 55684
Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGT 106751
||| ||| | || ||||||||||| || ||||| ||| || || || || ||
Sbjct 55685 CTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCC-GGAGCACTCGT 55743
Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811
||||| | |||| ||| | ||| || ||| || | ||||||||| || || || |
Sbjct 55744 TGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGA 55803
Query 106812 TCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868
|||| ||| || |||| ||||| | ||| || |||| || | || ||||| |
Sbjct 55804 TCCAAAGGGCGAGGAAA--AGATCGCGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGC 55860
Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------ 106922
| | || |||||||| | || ||| |||||||| |||||||| |||| ||||
Sbjct 55861 GAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCAC 55920
Query 106923 TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982
|| || ||| | || |||| | |||||||| || ||| ||| || || || |
Sbjct 55921 CAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCA 55977
Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGC 107040
|||| || | | ||| | || || || || ||| ||| || ||| | |||
Sbjct 55978 GCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGGA 56035
Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100
| | ||||| || | || || || |||||| ||| || || || |||
Sbjct 56036 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGT 56095
Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160
| | || || | ||||| || | ||| ||||||||||| | ||| ||||||||
Sbjct 56096 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 56155
Query 107161 GGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219
|||| || || || || || || || ||||| || || || | || || |||||
Sbjct 56156 AGACAGTTG-GGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC- 56213
Query 107220 TACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277
| |||| |||||| || ||| ||||| | || |||| || || || ||
Sbjct 56214 -AGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAAT 56272
Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGG 107310
||| | || |||||||||| ||||| ||| ||
Sbjct 56273 GCCAACAGCGACACGCATAATCATGTGTTGCGG 56305
>seq653
Length=48578
Score = 111 bits (122), Expect = 2e-19
Identities = 289/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054
|| ||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||
Sbjct 5494 ACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCAAAG 5553
Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 117114
||||| | | || | | | || | || ||||| || | ||||
Sbjct 5554 GGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGCAGACGGTCGGCCACA 5613
Query 117115 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCG 117174
| |||||||||| ||| | || ||||| |||| |||| || || || ||
Sbjct 5614 AATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCGCAGGGCAGAGCC 5673
Query 117175 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 117234
|| || |||| | | |||||||| || || || | |||| | |||| |
Sbjct 5674 TCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGTCCCGGATGACCTGC 5733
Query 117235 GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCC 117294
| |||| | | || | ||||| |||||| || ||| || ||
Sbjct 5734 TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGCAAAATCGGTGTGCAGTCCT 5793
Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354
|| || || || || |||||||| |||||| ||||| ||||||||||| ||||||||
Sbjct 5794 TCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCTTG 5853
Query 117355 AACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413
| |||| | || | |||| || | |||||||||||||| ||||| ||| || || ||
Sbjct 5854 AGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAGGC 5912
Query 117414 AAAAAGGCGCTCGGCGAA 117431
| ||| |||| |||||
Sbjct 5913 GACAAGACGCTGAGCGAA 5930
>seq160
Length=147577
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
|||||| |||||||||||||||| || || || || | ||| || | | || ||
Sbjct 85504 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85445
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9488
|| || || || || ||| ||||| || |||||||| || || | | | || ||
Sbjct 85444 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85385
Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
| || |||||| || ||| || ||||| |||| ||| || || ||||||||
Sbjct 85384 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85327
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| || || ||||||| |||||| || ||||||||||||||
Sbjct 85326 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589967105070680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |