Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq126 102 2e-16 >seq1 Length=623116 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || |||||||||| || || | ||||| || | ||| Sbjct 265157 GTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCCTCCAACTG 265098 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 265097 CTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 265038 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || |||||||| ||| || ||||| | || | |||||| || || Sbjct 265037 GCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTCTTGCCGGT 264978 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | |||||| Sbjct 264977 CAAGGTCTTGACGAAAATTTGCAT 264954 >seq126 Length=166795 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | || || || ||||||||||| |||||||| Sbjct 82593 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 82534 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 82533 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 82474 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || || ||||||| ||||| || |||| || || ||||| Sbjct 82473 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 82415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109455202312319