Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq298 379 4e-100 seq653 170 4e-37 >seq298 Length=101239 Score = 379 bits (420), Expect = 4e-100 Identities = 1061/1605 (66%), Gaps = 90/1605 (6%) Strand=Plus/Plus Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611 ||| || ||||| | || |||||||||| | || || || |||||||| || ||||| Sbjct 54545 CACTGTGAACTGGATGGGGGCAGCAGCAGCTTGAGTACGCAGGTAGTACATTCCAGTCTT 54604 Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCT 212670 || ||| |||||| | |||||| |||| ||| |||| | || || Sbjct 54605 CAGACCCAGCTTCCAGCCCGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATGGTCG 54657 Query 212671 GGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730 | || | || || || | ||| ||||| ||| |||||| ||||| | | | | Sbjct 54658 GATCTT--TCATG-------TGAATGTTGAGGGATTGAGACTGGTCGATGAAGGCGCCAC 54708 Query 212731 TGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTT 212790 ||| || ||||| | || || | |||||| | ||||||||| |||||| | | Sbjct 54709 GGTCGGCAGCCATCTGTACGACGGTACGCTGGGAAATCTCCCACACCGTCTTGTACAAGG 54768 Query 212791 CTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC- 212849 | |||| || | |||| | ||||||||| || | || || || ||||| Sbjct 54769 CCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCC-------ATTCTCAGCA 54821 Query 212850 -TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 || | ||| |||| | ||| ||| || ||| | | ||| ||||| || Sbjct 54822 ATG-ATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTTGAGAAG 54880 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 || ||||| | |||||| || || | ||| || | | |||||| | ||| || || Sbjct 54881 CCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGT 54940 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||| || |||| || ||||||||| ||||||||||| | |||||| || ||||||||||| Sbjct 54941 GTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGG 55000 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || |||||||| | || ||||||| ||| | |||| | | Sbjct 55001 GGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTG---------CTCTTTCAA 55051 Query 213083 ---GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 |||||| | ||||| |||| | ||| |||| ||||||||| |||| | || Sbjct 55052 AGAGTCCCAG-TCCCAGA--GGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAAT 55108 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 || ||| || ||| ||| | ||| |||||||||| ||| | |||| |||| || Sbjct 55109 CCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTG 55168 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||||||| ||||| |||| ||||||||| || || |||| | ||||||| | || Sbjct 55169 GCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGT-CTC 55227 Query 213260 G-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGA 213318 | || || | ||| ||||||||| || | ||||| ||||||| || ||||||| Sbjct 55228 GAGCTTCAGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGA 55287 Query 213319 CCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAA 213378 | |||| |||||||| | || | || ||| || | ||||| | ||||| Sbjct 55288 CGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGT 55347 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438 |||| ||| |||||| |||| | ||||||| | | || | |||||| | | || Sbjct 55348 GGTTGACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCA--- 55404 Query 213439 ACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGC 213492 ||| || ||| | ||| || || | || || |||||||| | Sbjct 55405 ACTTCTG---GAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAG 55461 Query 213493 TGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACA 213552 ||||||||||| ||||| ||||| | || | | |||||| ||||| || ||||| | Sbjct 55462 AAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAA 55521 Query 213553 GGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCT 213612 ||||| || |||||||| || ||||||| ||||| ||| |||||| | |||| Sbjct 55522 GGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCT 55581 Query 213613 TGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGT 213672 |||| |||||| ||||| || ||||| ||| | | | || || | ||| || | Sbjct 55582 TGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCT 55641 Query 213673 ACCTGGCCTTGACCACC---CG--CCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTA 213727 | |||||||| | || ||| || ||| ||| |||||||| ||||| Sbjct 55642 TCTGGGCCTTGATGGTCTTGCGACCCTTACC-CTC---GCG----CTCGTACTTCTCGTA 55693 Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCT-GTCCAGTCCCGGACAGGATGCGGGACACA 213786 | | | | || || | ||| | || | | | || || | || |||||||| Sbjct 55694 CAACGCCTCAAACTCCTCGCCGTA-ACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACA 55752 Query 213787 TGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 |||| ||||||| ||| || |||| |||||||| |||||| || || |||| ||| || Sbjct 55753 TGAGAGTCCAGTCACCGTTCTTCTC-GACTCTCTTCATGAAGAGATCAGGGATCCAAAGG 55811 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 ||| ||| || || | || | ||| ||| || ||| ||||| ||||| || Sbjct 55812 GCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGG 55871 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 || || |||| || |||||||| ||||| | ||||||||| ||||| || || | |||| Sbjct 55872 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTG 55931 Query 213966 ---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022 ||||| ||||| || | || ||||||||| ||||| | || || | Sbjct 55932 TTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACA 55991 Query 214023 CCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATG 214082 |||||||| ||||||||| ||||| || || ||||| | || | | ||| ||| Sbjct 55992 CCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAAC---GAATGC-GATG 56047 Query 214083 GA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 || ||| || ||||| || || |||||| ||||||||||| Sbjct 56048 GACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA 56092 >seq653 Length=48578 Score = 170 bits (188), Expect = 4e-37 Identities = 345/508 (68%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || | |||||||||||||| ||||| || | | ||||||||||| Sbjct 5481 CTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 5540 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| ||| ||||| ||| || || || ||| | ||| || || |||||| Sbjct 5541 CATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTT-TCATTGCCGAGGGTAACCAGCA 5599 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || || | || ||||| | ||||||| || ||||| || | ||| Sbjct 5600 GACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGAC 5659 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || | Sbjct 5660 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATGATGT 5719 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAGCATGC 48131 | || ||| ||| ||| || | ||||||| || ||||||| || Sbjct 5720 CC----CGGATGAC-CTGC----TTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGC 5770 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 ||||||| || |||||| |||||||| || |||||| | ||||||||| || | Sbjct 5771 AGGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGC 5830 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || | || |||||||| || || | ||| || | || |||||||||| Sbjct 5831 CAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGA 5890 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 ||||||| || || ||||| ||| || | || |||||| | |||| ||| || Sbjct 5891 TGCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAAAGTGGACTTCTGGTCGTTGA 5950 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||| || |||||||| |||||||| Sbjct 5951 TCCACTTGAGGGCCCAGTCGGCCTTCTT 5978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511176794880