Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq298 251 1e-61
seq653 159 6e-34
>seq298
Length=101239
Score = 251 bits (278), Expect = 1e-61
Identities = 1003/1576 (64%), Gaps = 52/1576 (3%)
Strand=Plus/Plus
Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176
|| || || ||||| || || | ||| || | | |||||| | ||| || ||| | |||
Sbjct 54888 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 54947
Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236
|||| || ||||||||||||||| ||||| | ||||| || ||||||||||| || ||
Sbjct 54948 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 55007
Query 221237 AGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAG 221296
|||||||||||||| | ||| ||||| || | ||| | || |||||| |||
Sbjct 55008 AGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAG 55067
Query 221297 TGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAC 221356
||||| || ||
Sbjct 55068 ---------AGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAA 55118
Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGC------GCAA 221410
|| || || |||||||| ||||| || ||| |||| || |||
Sbjct 55119 ACAGGGGAGCCTTCGTACGAGGAGTAGGTGCC------TTCTTCCTGCGCCAACTGGCAG 55172
Query 221411 GACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GC 221469
||| || ||||| ||||||||||||||||| |||||| |||||||||| ||| | ||
Sbjct 55173 GACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGG-TCTCGAGC 55231
Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529
|| | ||| ||||||||| ||||| | || | || || || ||||| || ||
Sbjct 55232 TTCAGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCC 55291
Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAG 221587
|| ||||||||| | || | | ||||| | ||| | || ||| || || || |
Sbjct 55292 GAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGC-CTCCTGA-ACAGGGTAGTGG 55349
Query 221588 TTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC 221647
|||||||| || | |||| | ||| | || || | |||||| || ||||
Sbjct 55350 TTGACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTC 55409
Query 221648 TGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707
||| | || | | ||| |||| | | || || || | | |||||
Sbjct 55410 TGGAAGT-------CA--TAGGTGCCTTCGTTGTAG---TCAACGAAGGTGGGCAGGGCC 55457
Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767
| |||||||| || ||||| ||||| || | |||| ||||| || ||
Sbjct 55458 AGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTG 55517
Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827
|| |||||| || |||||| || |||| || || || |||||| ||||| |||
Sbjct 55518 CAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCG 55577
Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887
|||||||| ||||| ||||| ||| |||||| ||| ||| | || || || |||
Sbjct 55578 TCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCAC 55637
Query 221888 AGTTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATA 221946
|| | ||||| || | || ||| ||||||| || | | | || ||
Sbjct 55638 AGCT-TCTGGGCCTTGATGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCG---TA 55693
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
| | ||||||| || ||||| ||| | ||||| | ||| | |||||||||
Sbjct 55694 CAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACAT 55753
Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
||| |||||| ||| | | ||| |||| ||||||||| || |||||||| || ||
Sbjct 55754 GAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGC 55813
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| || ||||| | || || ||||||| ||||| ||| || | ||||| | ||
Sbjct 55814 GAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAA 55873
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
||| || | || |||||||| ||||| || |||| ||| | || || |||||||||||
Sbjct 55874 CTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 55933
Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245
|| || || || | ||| | | | |||||||| || || | || || | |
Sbjct 55934 ACCGCCTTGGTCGA-CATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACAC 55992
Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305
||||||| |||||||||||| ||||| | || || | | | | | |
Sbjct 55993 CGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGT 56052
Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365
| ||||| || || || || || ||||||||||| ||||||| ||||| ||
Sbjct 56053 TGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGA 56112
Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425
|||| || || ||||||||||| | | | || || || || |||| || | | |
Sbjct 56113 TGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAG 56172
Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATCAGA 222484
|| | |||||| ||||| ||||| ||| || || || ||| || |||||||
Sbjct 56173 GGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAA-CAGCTTGCTCGACATCAAG 56231
Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544
| ||||||||| | || | | | |||||| || ||| | ||| | |||
Sbjct 56232 TTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATA 56291
Query 222545 TACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602
||||| || |||||||| || || | || || ||| |||||||| | |
Sbjct 56292 ATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCT--TGAGGAGGTACGACCTCT 56349
Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662
||| |||||||| || ||||| | | || ||||| | | ||| || | || | ||
Sbjct 56350 CCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCGAGT 56409
Query 222663 CCAGCTCCGACTTGTG 222678
| |||||| ||||||
Sbjct 56410 CGAGCTCCTCCTTGTG 56425
>seq653
Length=48578
Score = 159 bits (176), Expect = 6e-34
Identities = 331/493 (67%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| | |||||||||||| ||||| | || || | |||| || || |||||
Sbjct 5966 TGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGTCTTGTCGCCTTC 5907
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|||||||| ||||||||||| ||| |||| | |||||| ||||||| ||||||||| ||
Sbjct 5906 GCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTTGGCTCAAGAAG 5847
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| |||||| || ||| ||| ||||| || |||||| | ||||| || ||
Sbjct 5846 CGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCGACGAAGGACTG 5787
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072
|||| ||||||||||||||||||||| | |||| || ||| || |||| |
Sbjct 5786 CACACCGATTTTGCCTGCCTGCTCTACTC---CCACCTGAAGCAC-CGCCCCAGCAAGCA 5731
Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132
| | || ||||| || || || |||| ||| ||||||| |
Sbjct 5730 GGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGC 5671
Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192
| || ||||| || ||||||| || |||||||| | |||
Sbjct 5670 TCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACATTGAATTTGT 5611
Query 26193 GGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTAC-AGT-ACGCCTAACC 26248
|||||||| ||||||| | || || || | | ||||| ||| | || || |
Sbjct 5610 GGCCGACCGTCTGCTGGTTACC--CTCGGCAATGAAAAGGTCTACAAGTCAAGC--AATC 5555
Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308
| || ||||||||||| ||||| || | | || ||||||||||||||||| ||| | |
Sbjct 5554 CCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTG 5495
Query 26309 TCGGCGACTATCA 26321
||| ||| || ||
Sbjct 5494 TCGCCGATTACCA 5482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928823239190080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |