Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq298 251 1e-61 seq653 159 6e-34 >seq298 Length=101239 Score = 251 bits (278), Expect = 1e-61 Identities = 1003/1576 (64%), Gaps = 52/1576 (3%) Strand=Plus/Plus Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 || || || ||||| || || | ||| || | | |||||| | ||| || ||| | ||| Sbjct 54888 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 54947 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 |||| || ||||||||||||||| ||||| | ||||| || ||||||||||| || || Sbjct 54948 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 55007 Query 221237 AGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAG 221296 |||||||||||||| | ||| ||||| || | ||| | || |||||| ||| Sbjct 55008 AGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAG 55067 Query 221297 TGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAC 221356 ||||| || || Sbjct 55068 ---------AGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAA 55118 Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGC------GCAA 221410 || || || |||||||| ||||| || ||| |||| || ||| Sbjct 55119 ACAGGGGAGCCTTCGTACGAGGAGTAGGTGCC------TTCTTCCTGCGCCAACTGGCAG 55172 Query 221411 GACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GC 221469 ||| || ||||| ||||||||||||||||| |||||| |||||||||| ||| | || Sbjct 55173 GACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGG-TCTCGAGC 55231 Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 || | ||| ||||||||| ||||| | || | || || || ||||| || || Sbjct 55232 TTCAGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCC 55291 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAG 221587 || ||||||||| | || | | ||||| | ||| | || ||| || || || | Sbjct 55292 GAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGC-CTCCTGA-ACAGGGTAGTGG 55349 Query 221588 TTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC 221647 |||||||| || | |||| | ||| | || || | |||||| || |||| Sbjct 55350 TTGACGTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTC 55409 Query 221648 TGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 ||| | || | | ||| |||| | | || || || | | ||||| Sbjct 55410 TGGAAGT-------CA--TAGGTGCCTTCGTTGTAG---TCAACGAAGGTGGGCAGGGCC 55457 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | |||||||| || ||||| ||||| || | |||| ||||| || || Sbjct 55458 AGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTG 55517 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || |||||| || |||||| || |||| || || || |||||| ||||| ||| Sbjct 55518 CAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCG 55577 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||| ||||| ||||| ||| |||||| ||| ||| | || || || ||| Sbjct 55578 TCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCAC 55637 Query 221888 AGTTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATA 221946 || | ||||| || | || ||| ||||||| || | | | || || Sbjct 55638 AGCT-TCTGGGCCTTGATGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCG---TA 55693 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 | | ||||||| || ||||| ||| | ||||| | ||| | ||||||||| Sbjct 55694 CAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACAT 55753 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| |||||| ||| | | ||| |||| ||||||||| || |||||||| || || Sbjct 55754 GAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGC 55813 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || ||||| | || || ||||||| ||||| ||| || | ||||| | || Sbjct 55814 GAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAA 55873 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||| || | || |||||||| ||||| || |||| ||| | || || ||||||||||| Sbjct 55874 CTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 55933 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 || || || || | ||| | | | |||||||| || || | || || | | Sbjct 55934 ACCGCCTTGGTCGA-CATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACAC 55992 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305 ||||||| |||||||||||| ||||| | || || | | | | | | Sbjct 55993 CGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGT 56052 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 | ||||| || || || || || ||||||||||| ||||||| ||||| || Sbjct 56053 TGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGA 56112 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 |||| || || ||||||||||| | | | || || || || |||| || | | | Sbjct 56113 TGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAG 56172 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATCAGA 222484 || | |||||| ||||| ||||| ||| || || || ||| || ||||||| Sbjct 56173 GGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAA-CAGCTTGCTCGACATCAAG 56231 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||||||||| | || | | | |||||| || ||| | ||| | ||| Sbjct 56232 TTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATA 56291 Query 222545 TACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602 ||||| || |||||||| || || | || || ||| |||||||| | | Sbjct 56292 ATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCT--TGAGGAGGTACGACCTCT 56349 Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662 ||| |||||||| || ||||| | | || ||||| | | ||| || | || | || Sbjct 56350 CCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCGAGT 56409 Query 222663 CCAGCTCCGACTTGTG 222678 | |||||| |||||| Sbjct 56410 CGAGCTCCTCCTTGTG 56425 >seq653 Length=48578 Score = 159 bits (176), Expect = 6e-34 Identities = 331/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| | |||||||||||| ||||| | || || | |||| || || ||||| Sbjct 5966 TGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGTCTTGTCGCCTTC 5907 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 |||||||| ||||||||||| ||| |||| | |||||| ||||||| ||||||||| || Sbjct 5906 GCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTTGGCTCAAGAAG 5847 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| ||||| || |||||| | ||||| || || Sbjct 5846 CGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCGACGAAGGACTG 5787 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072 |||| ||||||||||||||||||||| | |||| || ||| || |||| | Sbjct 5786 CACACCGATTTTGCCTGCCTGCTCTACTC---CCACCTGAAGCAC-CGCCCCAGCAAGCA 5731 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | | || ||||| || || || |||| ||| ||||||| | Sbjct 5730 GGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGC 5671 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | || ||||| || ||||||| || |||||||| | ||| Sbjct 5670 TCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACATTGAATTTGT 5611 Query 26193 GGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTAC-AGT-ACGCCTAACC 26248 |||||||| ||||||| | || || || | | ||||| ||| | || || | Sbjct 5610 GGCCGACCGTCTGCTGGTTACC--CTCGGCAATGAAAAGGTCTACAAGTCAAGC--AATC 5555 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | || ||||||||||| ||||| || | | || ||||||||||||||||| ||| | | Sbjct 5554 CCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTG 5495 Query 26309 TCGGCGACTATCA 26321 ||| ||| || || Sbjct 5494 TCGCCGATTACCA 5482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823239190080