Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq653 111 2e-19
>seq653
Length=48578
Score = 111 bits (122), Expect = 2e-19
Identities = 289/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
||||| |||| ||| | || || || ||| ||||| |||||||||||||| | ||
Sbjct 5930 TTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT- 5872
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
|||| | || | |||| | |||||||| ||||||||||| ||||| |||||| |||||
Sbjct 5871 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGA 5812
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTT 65249
||| || || || || || || || ||| || |||||| ||||| | |
Sbjct 5811 ACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCACCT 5752
Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309
| | | |||| | | |||| | |||| | || || || |||||||
Sbjct 5751 GAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGA 5692
Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369
| | | |||| || || || || || || |||| |||| ||||| || | ||
Sbjct 5691 GCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTCCAACCTCAT 5632
Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT 65429
| |||||||||| | |||| | || ||||| || | || | |
Sbjct 5631 GAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGGCAATGAAAAGGT 5572
Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489
| || | | ||||| |||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 5571 CTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAA 5512
Query 65490 CTTCTTTGAGAAGCGAGT 65507
||||||||||||||| ||
Sbjct 5511 CTTCTTTGAGAAGCGTGT 5494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596555752128160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |