Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq298 185 1e-40 seq129 132 6e-25 seq653 125 9e-23 seq15 125 9e-23 seq531 107 2e-17 seq70 104 3e-16 seq321 91.5 2e-12 >seq298 Length=101239 Score = 185 bits (204), Expect = 1e-40 Identities = 228/312 (73%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| ||||| || |||| ||| ||||| || ||||| || |||| |||||||| Sbjct 55941 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 56000 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||||| | ||||| ||| | || || | || || | ||| Sbjct 56001 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 56060 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || ||| |||||| || | |||||| ||||| |||||||||||||| ||| Sbjct 56061 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 56120 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| ||||||| || ||||| |||||||| || ||| | || | |||||| Sbjct 56121 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 56180 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 |||||||| || ||||||| || |||||||| || | |||||| || ||| || Sbjct 56181 GCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGACATCAAGTTGTACGTC 56240 Query 1630366 GCGAGCACGCGC 1630377 ||| |||||| Sbjct 56241 TCGATAACGCGC 56252 Score = 109 bits (120), Expect = 7e-18 Identities = 323/500 (65%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 1628108 TGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGA 1628167 |||||||||||| | |||||||| || || || |||| ||| ||| || Sbjct 55447 TGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGA 55506 Query 1628168 CGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||| || ||||| ||||||| | | | | ||||| ||||||| ||||||| | | Sbjct 55507 TGATTTCAGTGCAAAGGTTGGA-GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTG 55565 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| |||||||||||| |||||| |||| ||| ||||| |||||||| | | | Sbjct 55566 CGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGG 55625 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCGG--CCCTNNNNNNNN 1628343 ||||| |||| | || | || | || ||| ||| | |||| Sbjct 55626 ATGGCGTACCACAGCTTCTGGGC---CTTGATGGTCTTGCGACCCTTACCCTCGCGCTCG 55682 Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403 ||||| || ||||||| || ||| ||||||| |||| Sbjct 55683 TACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCG 55742 Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGC---ATAAAGAGGTCA 1628460 ||||| | ||| | |||||| |||| || | || | | || ||||| ||| Sbjct 55743 TTGGGACACATGAGAGTCCAGTC---ACCGTTCTTCTCGACTCTCTTCATGAAGAGATCA 55799 Query 1628461 CACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||| || ||| || || ||||| || ||| ||||||||||||||||||||| Sbjct 55800 GGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTG 55859 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 || ||||| | |||| | ||||||||||| ||||| |||||| ||| ||||| Sbjct 55860 CGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCA 55919 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 || |||||| ||||| Sbjct 55920 CCAGGTCGCTTGTTACCGCC 55939 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||||||||| ||||| ||||| | ||||||| || || | || ||| | | Sbjct 55189 CGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGG 55248 Query 1627847 GCAGGTCCAT--CATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCG 1627904 ||| | || || || ||| | || || |||||||| ||||||| || || || || Sbjct 55249 GCATGCGCAGGGCAAGG--AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCG 55306 Query 1627905 GTGGCGCAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCG 1627964 ||||||| ||| || |||||||| | || ||||||||||||| ||| || | | Sbjct 55307 ATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCT 55366 Query 1627965 GTTGAGGTTGCCCACCACGACCTGGACGATCTCGTGCA 1628002 ||| | ||||| || || |||||| || |||||||| Sbjct 55367 GTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCA 55404 >seq129 Length=166225 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063 ||| ||||||| || || || ||||||| | ||| |||| || ||||||| Sbjct 39556 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 39497 Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123 | || ||||||||| || ||||||||||||| |||||| || | || |||| || ||| Sbjct 39496 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 39437 Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183 |||||||| || || ||||||| || ||||||||||||| || || | || ||| Sbjct 39436 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 39377 Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 ||| |||| | | |||||||| | || || ||||||||||| ||||| Sbjct 39376 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCG 39324 >seq653 Length=48578 Score = 125 bits (138), Expect = 9e-23 Identities = 146/192 (76%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||| ||| | ||| ||| |||| ||||| |||||||| || |||||| Sbjct 5791 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 5850 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||||||||||| |||| || || ||||| ||||||||||| || || || || Sbjct 5851 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 5909 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||| || |||| || || ||| || || | |||||||||||| | ||||| Sbjct 5910 GGCGACAAGACGCTGAGCGAAAGTG--GA-CTTCTGGTCGTTGATCCACTTGAGGGCCCA 5966 Query 869359 GTCGGCCTTTTT 869370 ||||||||| || Sbjct 5967 GTCGGCCTTCTT 5978 Score = 113 bits (124), Expect = 6e-19 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 5476 GCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 5535 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || || ||| | ||||||| |||||| ||||| | | Sbjct 5536 TTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACC 5595 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| |||||||| ||||| || |||||||| ||||||| || ||||| |||| | Sbjct 5596 AGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGG 5655 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | ||||| | |||| | | ||||| | ||| |||| |||||| ||||| ||| Sbjct 5656 AGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATG 5715 Query 868931 AT 868932 || Sbjct 5716 AT 5717 >seq15 Length=343365 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||| ||||| ||||||||||| || ||||| | || |||||| | || |||||| Sbjct 331170 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 331229 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||||||||||||||| || ||||||| Sbjct 331230 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 331278 >seq531 Length=61705 Score = 107 bits (118), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 22/233 (9%) Strand=Plus/Minus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTG---AGCGTGTGCTGCGCG 96710 ||||||||||||||||| |||||||| || ||| |||||||| |||| ||| || || Sbjct 27254 GCCGAGAACCTCATGATTGTCGACCTCGTCCGCCACGACCTGCACGGCGTCTGCGGCTCG 27195 Query 96711 CCCGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTG 96770 |||| ||| |||||| | ||||||| | | ||| |||||| ||||| Sbjct 27194 ---GGCAACGTGACGGTGCCG------CACCTGATGAAGGTCGAGGAGTACGCCACCGTG 27144 Query 96771 CACCAGATGGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGG--------ACGGCGC 96822 ||||||| | |||| ||| |||| | | | |||||| ||| |||| || Sbjct 27143 TTCCAGATGATCACCATTGTCAACGGGCAGTT--GCCGCGGACGGAGAGGCACACGGGGC 27086 Query 96823 TCGACCTCGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAG 96875 ||||||| || ||| ||| |||||||| |||||||||||||||||| Sbjct 27085 TCGACCTGCTGGCGGCGAGCTTGCCGCCGGGGAGCATGACGGGCGCGCCCAAG 27033 >seq70 Length=220282 Score = 104 bits (114), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 507590 GGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCG 507649 || ||| ||| |||||||||||| | | |||||| | | | | ||||| |||||| Sbjct 168638 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 168579 Query 507650 TCGCTGCACATGGGCTCCATGCTCATGCACA-AGGTGGTGCCCATGCCCGGGCGCACCAT 507708 |||||||||| || |||||| | |||| || | | | | ||||| |||| | Sbjct 168578 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 168520 Query 507709 GCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 507768 || |||||||| |||||||| |||||||||| || || || || ||||||||||| Sbjct 168519 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 168460 Query 507769 CCTGCACGTGCCCCAG 507784 ||| ||||| || ||| Sbjct 168459 CCTCCACGTTCCTCAG 168444 >seq321 Length=96009 Score = 91.5 bits (100), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 |||||||||||||| |||||||| ||| | ||||| ||||||||||| || |||| Sbjct 57513 GGCCTCGGCGAGCCATGCTTTGATAAGCTTGAGGCTCTCCTCGCCCACGCTATCATGTCT 57572 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || ||||||||||| || ||||||||| Sbjct 57573 ATTCCTGCCACCAAGGGCTTTGAGATTGGC 57602 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| || ||||||| || ||| | | ||||| || |||||||| ||||| Sbjct 57090 CCGCGCCCCTCCCATGCCGACTGGACTTACCTTGAGAAGTATGGTATCAAGGCCTCGTCT 57149 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || |||||| ||||||||||| | ||||| ||||| ||||| || ||| Sbjct 57150 GGTGGCGGCCGGAGCAGCGCCCGCGAGACTATAGCCCGCGTAGCCGCTGGCGCTGTTGCC 57209 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 57210 GAGAAGTGGCT 57220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106986805883669