Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq298 185 1e-40
seq129 132 6e-25
seq653 125 9e-23
seq15 125 9e-23
seq531 107 2e-17
seq70 104 3e-16
seq321 91.5 2e-12
>seq298
Length=101239
Score = 185 bits (204), Expect = 1e-40
Identities = 228/312 (73%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||| ||||| || |||| ||| ||||| || ||||| || |||| ||||||||
Sbjct 55941 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 56000
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||||||||||| | ||||| ||| | || || | || || | |||
Sbjct 56001 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 56060
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
||||| || ||| |||||| || | |||||| ||||| |||||||||||||| |||
Sbjct 56061 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 56120
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||||| ||||||| || ||||| |||||||| || ||| | || | ||||||
Sbjct 56121 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 56180
Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365
|||||||| || ||||||| || |||||||| || | |||||| || ||| ||
Sbjct 56181 GCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGACATCAAGTTGTACGTC 56240
Query 1630366 GCGAGCACGCGC 1630377
||| ||||||
Sbjct 56241 TCGATAACGCGC 56252
Score = 109 bits (120), Expect = 7e-18
Identities = 323/500 (65%), Gaps = 14/500 (3%)
Strand=Plus/Plus
Query 1628108 TGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGA 1628167
|||||||||||| | |||||||| || || || |||| ||| ||| ||
Sbjct 55447 TGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGA 55506
Query 1628168 CGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||| || ||||| ||||||| | | | | ||||| ||||||| ||||||| | |
Sbjct 55507 TGATTTCAGTGCAAAGGTTGGA-GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTG 55565
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
||||| |||||||||||| |||||| |||| ||| ||||| |||||||| | | |
Sbjct 55566 CGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGG 55625
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCGG--CCCTNNNNNNNN 1628343
||||| |||| | || | || | || ||| ||| | ||||
Sbjct 55626 ATGGCGTACCACAGCTTCTGGGC---CTTGATGGTCTTGCGACCCTTACCCTCGCGCTCG 55682
Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403
||||| || ||||||| || ||| ||||||| ||||
Sbjct 55683 TACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCACTCG 55742
Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGC---ATAAAGAGGTCA 1628460
||||| | ||| | |||||| |||| || | || | | || ||||| |||
Sbjct 55743 TTGGGACACATGAGAGTCCAGTC---ACCGTTCTTCTCGACTCTCTTCATGAAGAGATCA 55799
Query 1628461 CACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520
|||| || ||| || || ||||| || ||| |||||||||||||||||||||
Sbjct 55800 GGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTG 55859
Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580
|| ||||| | |||| | ||||||||||| ||||| |||||| ||| |||||
Sbjct 55860 CGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCA 55919
Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600
|| |||||| |||||
Sbjct 55920 CCAGGTCGCTTGTTACCGCC 55939
Score = 91.5 bits (100), Expect = 2e-12
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846
||||||||| ||||| ||||| | ||||||| || || | || ||| | |
Sbjct 55189 CGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGG 55248
Query 1627847 GCAGGTCCAT--CATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCG 1627904
||| | || || || ||| | || || |||||||| ||||||| || || || ||
Sbjct 55249 GCATGCGCAGGGCAAGG--AACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCG 55306
Query 1627905 GTGGCGCAGGTTCGAGTGGCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCG 1627964
||||||| ||| || |||||||| | || ||||||||||||| ||| || | |
Sbjct 55307 ATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCT 55366
Query 1627965 GTTGAGGTTGCCCACCACGACCTGGACGATCTCGTGCA 1628002
||| | ||||| || || |||||| || ||||||||
Sbjct 55367 GTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCA 55404
>seq129
Length=166225
Score = 132 bits (146), Expect = 6e-25
Identities = 169/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063
||| ||||||| || || || ||||||| | ||| |||| || |||||||
Sbjct 39556 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 39497
Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123
| || ||||||||| || ||||||||||||| |||||| || | || |||| || |||
Sbjct 39496 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 39437
Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183
|||||||| || || ||||||| || ||||||||||||| || || | || |||
Sbjct 39436 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 39377
Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236
||| |||| | | |||||||| | || || ||||||||||| |||||
Sbjct 39376 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCG 39324
>seq653
Length=48578
Score = 125 bits (138), Expect = 9e-23
Identities = 146/192 (76%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||||||| ||| | ||| ||| |||| ||||| |||||||| || ||||||
Sbjct 5791 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 5850
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|||||||||||||||| |||| || || ||||| ||||||||||| || || || ||
Sbjct 5851 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 5909
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| ||| || |||| || || ||| || || | |||||||||||| | |||||
Sbjct 5910 GGCGACAAGACGCTGAGCGAAAGTG--GA-CTTCTGGTCGTTGATCCACTTGAGGGCCCA 5966
Query 869359 GTCGGCCTTTTT 869370
||||||||| ||
Sbjct 5967 GTCGGCCTTCTT 5978
Score = 113 bits (124), Expect = 6e-19
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 5476 GCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 5535
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || || ||| | ||||||| |||||| ||||| | |
Sbjct 5536 TTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACC 5595
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| |||||||| ||||| || |||||||| ||||||| || ||||| |||| |
Sbjct 5596 AGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGG 5655
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| | ||||| | |||| | | ||||| | ||| |||| |||||| ||||| |||
Sbjct 5656 AGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTCGACAATG 5715
Query 868931 AT 868932
||
Sbjct 5716 AT 5717
>seq15
Length=343365
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||| ||||| ||||||||||| || ||||| | || |||||| | || ||||||
Sbjct 331170 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 331229
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 331230 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 331278
>seq531
Length=61705
Score = 107 bits (118), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 22/233 (9%)
Strand=Plus/Minus
Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTG---AGCGTGTGCTGCGCG 96710
||||||||||||||||| |||||||| || ||| |||||||| |||| ||| || ||
Sbjct 27254 GCCGAGAACCTCATGATTGTCGACCTCGTCCGCCACGACCTGCACGGCGTCTGCGGCTCG 27195
Query 96711 CCCGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTG 96770
|||| ||| |||||| | ||||||| | | ||| |||||| |||||
Sbjct 27194 ---GGCAACGTGACGGTGCCG------CACCTGATGAAGGTCGAGGAGTACGCCACCGTG 27144
Query 96771 CACCAGATGGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGG--------ACGGCGC 96822
||||||| | |||| ||| |||| | | | |||||| ||| |||| ||
Sbjct 27143 TTCCAGATGATCACCATTGTCAACGGGCAGTT--GCCGCGGACGGAGAGGCACACGGGGC 27086
Query 96823 TCGACCTCGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAG 96875
||||||| || ||| ||| |||||||| ||||||||||||||||||
Sbjct 27085 TCGACCTGCTGGCGGCGAGCTTGCCGCCGGGGAGCATGACGGGCGCGCCCAAG 27033
>seq70
Length=220282
Score = 104 bits (114), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 507590 GGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCG 507649
|| ||| ||| |||||||||||| | | |||||| | | | | ||||| ||||||
Sbjct 168638 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 168579
Query 507650 TCGCTGCACATGGGCTCCATGCTCATGCACA-AGGTGGTGCCCATGCCCGGGCGCACCAT 507708
|||||||||| || |||||| | |||| || | | | | ||||| |||| |
Sbjct 168578 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 168520
Query 507709 GCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 507768
|| |||||||| |||||||| |||||||||| || || || || |||||||||||
Sbjct 168519 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 168460
Query 507769 CCTGCACGTGCCCCAG 507784
||| ||||| || |||
Sbjct 168459 CCTCCACGTTCCTCAG 168444
>seq321
Length=96009
Score = 91.5 bits (100), Expect = 2e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
|||||||||||||| |||||||| ||| | ||||| ||||||||||| || ||||
Sbjct 57513 GGCCTCGGCGAGCCATGCTTTGATAAGCTTGAGGCTCTCCTCGCCCACGCTATCATGTCT 57572
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
|| || ||||||||||| || |||||||||
Sbjct 57573 ATTCCTGCCACCAAGGGCTTTGAGATTGGC 57602
Score = 87.8 bits (96), Expect = 2e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
||||| ||||| || ||||||| || ||| | | ||||| || |||||||| |||||
Sbjct 57090 CCGCGCCCCTCCCATGCCGACTGGACTTACCTTGAGAAGTATGGTATCAAGGCCTCGTCT 57149
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
|| || |||||| ||||||||||| | ||||| ||||| ||||| || |||
Sbjct 57150 GGTGGCGGCCGGAGCAGCGCCCGCGAGACTATAGCCCGCGTAGCCGCTGGCGCTGTTGCC 57209
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 57210 GAGAAGTGGCT 57220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106986805883669
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