Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq129 165 1e-34 seq298 147 3e-29 seq653 120 5e-21 seq70 116 6e-20 seq15 116 6e-20 seq98 96.9 5e-14 seq20 87.8 3e-11 >seq129 Length=166225 Score = 165 bits (182), Expect = 1e-34 Identities = 216/299 (72%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCG 2019200 ||| | ||||| || |||| ||||||| ||| ||| | | || ||||||| Sbjct 39556 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 39497 Query 2019201 CCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAG 2019260 | |||||||||||| || |||||||||| || |||||| || | || |||| || ||| Sbjct 39496 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 39437 Query 2019261 CAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGC 2019320 ||||||||||| || ||||||| ||| |||||||||||||||| ||| | |||||| Sbjct 39436 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 39377 Query 2019321 AACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCG 2019380 ||| |||| | | ||||||| | || ||| || ||||||||| |||| | || Sbjct 39376 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCGGTACGCC 39317 Query 2019381 CGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | |||||||||| ||| | | | ||| |||| |||| || || || || ||||| Sbjct 39316 AGACTCACCGACGAGCAGGTAGTCAAGCGGCTGCTGCAGATCATTGAGGCGGAGAAGGT 39258 >seq298 Length=101239 Score = 147 bits (162), Expect = 3e-29 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||||||||| || |||| ||| ||||| || ||||| || || | |||||||| Sbjct 55941 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 56000 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||||| | ||||| ||| | || || | || || | ||| Sbjct 56001 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 56060 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || ||| |||||| || | |||||| | || || || ||||||||||| ||| Sbjct 56061 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 56120 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| ||||||| || | || |||||||| || ||| | | | |||||| Sbjct 56121 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 56180 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||| || ||||||| Sbjct 56181 GCGTTGAACAGAGTGGGCG 56199 Score = 109 bits (120), Expect = 9e-18 Identities = 295/455 (65%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGT 2071621 |||| ||| ||| || || || ||||| ||||||| | || |||| || |||| Sbjct 55491 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAG--CTGCGGATGGTACCGAGGT 55548 Query 2071622 TCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCT 2071681 ||| ||||||||| | ||||| |||||||||||| ||||||| |||| ||||||| Sbjct 55549 TCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCT 55608 Query 2071682 CGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGC 2071741 | |||||||| | |||||| |||| | || |||| || | || ||| Sbjct 55609 CCGTCTGCGCCTCAAGGATGGCGTACCACA----GCTTCTGGGCCTTGATGGTCTTGCGA 55664 Query 2071742 GGC----CCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCG 2071797 | ||| | | || ||||| | |||||| || ||| Sbjct 55665 CCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCG 55724 Query 2071798 TGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGG 2071857 ||||||| |||| || || | ||| | |||||| ||| || | || | Sbjct 55725 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 55784 Query 2071858 CGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCC 2071917 ||| || || || |||| ||| || || |||||||| || ||| ||||||| Sbjct 55785 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 55844 Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977 |||||||||||||| || ||||| | |||| || ||||||||||| ||||| ||| Sbjct 55845 TTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 55904 Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| ||| ||||| || |||||| ||||| Sbjct 55905 TAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCC 55939 >seq653 Length=48578 Score = 120 bits (132), Expect = 5e-21 Identities = 145/194 (75%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||| ||| | ||| ||| ||| ||||| |||||||| || |||||| Sbjct 5791 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 5850 Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||||||||||| | || || || ||||| ||||||||||| || || || || Sbjct 5851 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 5909 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCC 794517 | |||| || |||| || ||||| || | ||| | |||||||||||| | ||| Sbjct 5910 GGCGACAAGACGCTGAGCGAAAGT-----GGACTTCTGGTCGTTGATCCACTTGAGGGCC 5964 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 5965 CAGTCGGCCTTCTT 5978 Score = 113 bits (124), Expect = 7e-19 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 5468 TGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 5527 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || || ||| | | |||| ||| || |||| Sbjct 5528 GGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGA 5587 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| |||||||| || |||||||||||||| ||||||| || |||| Sbjct 5588 GGGTAACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCA 5647 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||| ||| | |||||| | |||| ||| ||||| | ||| |||| |||||| | Sbjct 5648 TCCCGAGGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGT 5707 Query 794131 CGATGATGAT 794140 ||| ||||| Sbjct 5708 CGACAATGAT 5717 >seq70 Length=220282 Score = 116 bits (128), Expect = 6e-20 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 || |||| || |||||||||||| ||| |||||| | | || | ||||| |||||| Sbjct 168638 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 168579 Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCCGGTCGCACCTT 429637 ||||| |||| || ||| ||| | |||| || | | | | ||||| |||||| Sbjct 168578 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 168520 Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697 ||| ||||||||| |||| ||| |||||||||| || || || || ||||||||||| Sbjct 168519 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 168460 Query 429698 CCTGCACGTGCCCCAG 429713 ||| ||||| || ||| Sbjct 168459 CCTCCACGTTCCTCAG 168444 >seq15 Length=343365 Score = 116 bits (128), Expect = 6e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| ||||| ||||||||||| || ||||| | || |||||||| || |||||| Sbjct 331170 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 331229 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| ||||||||||| || ||||||| Sbjct 331230 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 331278 >seq98 Length=184439 Score = 96.9 bits (106), Expect = 5e-14 Identities = 235/351 (67%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 2175039 GCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAAC 2175098 ||||||| | | |||||||| || ||| | ||||||||||||||||||| || Sbjct 68571 GCGGCGGCACCAATGGCATCGATAGCAACACCCAGGTTGCCGTCGGTGCCGTTTTTGAAA 68630 Query 2175099 CCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGC 2175158 ||||| || || | ||| | || |||| |||||||||| ||| |||||||||||| Sbjct 68631 CCGACGGGGAAGGACAGGCCGGAAGCCAGCTCGCGGTGCAGCTGAGACTCGGTGGTGCGG 68690 Query 2175159 GCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGA 2175218 ||||| | ||| ||| | | || ||| || | | ||| | | | ||| Sbjct 68691 GCGCCAATGGCACCCACGGAGATGAAGTCGGCAAGGAACTGCGGGGAGATGGTGTCGAGC 68750 Query 2175219 AACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGAT 2175278 | |||| || | |||| |||| | ||| | |||||||| | || | ||||| Sbjct 68751 ATCTCGCTGGCAATGGGCATGCCG--GCCGA-GGTCAGGTCGCTGAAGAGCTGGCGCGA- 68806 Query 2175279 GTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 2175337 | ||| ||||| | | | | | ||||| || |||||| || ||| || Sbjct 68807 GACGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGATCAGACC 68866 Query 2175338 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCAC 2175388 |||||| ||||| || ||||| ||||| || | |||||||||||||| || Sbjct 68867 CTTCCAGCCGACAGTGGTGCGTGGCTTCTCCAGGTAGGCGCGCATGACGAC 68917 >seq20 Length=326219 Score = 87.8 bits (96), Expect = 3e-11 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGTCAGA-CGAGGC 2233149 |||||||| ||||| || ||||| || ||||| || || ||||| | | || ||| || Sbjct 224724 GTCGCCTTCCCCACAGAAACCGTGTACGGCCTGGGTGCGGACGCCACC-CGGAGCGATGC 224782 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 ||| || |||||| |||||||||||| |||||| |||||||| ||||| |||||| Sbjct 224783 GGTAAAGGGCATCTACTCCGCCAAGGGCCGGCCGTCCGACAACCCGCTCATCTCGCACGT 224842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916048862440223