Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq129 165 1e-34
seq298 147 3e-29
seq653 120 5e-21
seq70 116 6e-20
seq15 116 6e-20
seq98 96.9 5e-14
seq20 87.8 3e-11
>seq129
Length=166225
Score = 165 bits (182), Expect = 1e-34
Identities = 216/299 (72%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCG 2019200
||| | ||||| || |||| ||||||| ||| ||| | | || |||||||
Sbjct 39556 GGCATCGACGTTGTTCGTAATCGCATCAAGGGCTTCGCACAGAAGAAAGTCACCCTGCCG 39497
Query 2019201 CCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAG 2019260
| |||||||||||| || |||||||||| || |||||| || | || |||| || |||
Sbjct 39496 CAGGGCCGCCACAAGCTGGTCATCCTCGACGAAGCCGACAGCATGACATCGGGCGCGCAG 39437
Query 2019261 CAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGC 2019320
||||||||||| || ||||||| ||| |||||||||||||||| ||| | ||||||
Sbjct 39436 CAGGCCCTCCGCCGAACGATGGAAATCTACTCCAACACGACGCGGTTCGCGTTTGCCTGC 39377
Query 2019321 AACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCG 2019380
||| |||| | | ||||||| | || ||| || ||||||||| |||| | ||
Sbjct 39376 AACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCATCCTGCGGTACGCC 39317
Query 2019381 CGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
| |||||||||| ||| | | | ||| |||| |||| || || || || |||||
Sbjct 39316 AGACTCACCGACGAGCAGGTAGTCAAGCGGCTGCTGCAGATCATTGAGGCGGAGAAGGT 39258
>seq298
Length=101239
Score = 147 bits (162), Expect = 3e-29
Identities = 188/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|||||||||||||| || |||| ||| ||||| || ||||| || || | ||||||||
Sbjct 55941 TGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAG 56000
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|||||||||||||| | ||||| ||| | || || | || || | |||
Sbjct 56001 GTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACGAATGCGATGGACGTTGAGACCG 56060
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| || ||| |||||| || | |||||| | || || || ||||||||||| |||
Sbjct 56061 ATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCG 56120
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|| ||||| ||||||| || | || |||||||| || ||| | | | ||||||
Sbjct 56121 ATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTGGGCCTGAGGGGTGCCG 56180
Query 2073781 GCATTGAAGAGCGTGGGCG 2073799
|| ||||| || |||||||
Sbjct 56181 GCGTTGAACAGAGTGGGCG 56199
Score = 109 bits (120), Expect = 9e-18
Identities = 295/455 (65%), Gaps = 12/455 (3%)
Strand=Plus/Plus
Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGT 2071621
|||| ||| ||| || || || ||||| ||||||| | || |||| || ||||
Sbjct 55491 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAG--CTGCGGATGGTACCGAGGT 55548
Query 2071622 TCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCT 2071681
||| ||||||||| | ||||| |||||||||||| ||||||| |||| |||||||
Sbjct 55549 TCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCT 55608
Query 2071682 CGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGC 2071741
| |||||||| | |||||| |||| | || |||| || | || |||
Sbjct 55609 CCGTCTGCGCCTCAAGGATGGCGTACCACA----GCTTCTGGGCCTTGATGGTCTTGCGA 55664
Query 2071742 GGC----CCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCG 2071797
| ||| | | || ||||| | |||||| || |||
Sbjct 55665 CCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCG 55724
Query 2071798 TGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGG 2071857
||||||| |||| || || | ||| | |||||| ||| || | || |
Sbjct 55725 GCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 55784
Query 2071858 CGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCC 2071917
||| || || || |||| ||| || || |||||||| || ||| |||||||
Sbjct 55785 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCC 55844
Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977
|||||||||||||| || ||||| | |||| || ||||||||||| ||||| |||
Sbjct 55845 TTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 55904
Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||| ||| ||||| || |||||| |||||
Sbjct 55905 TAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCC 55939
>seq653
Length=48578
Score = 120 bits (132), Expect = 5e-21
Identities = 145/194 (75%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||||||| ||| | ||| ||| ||| ||||| |||||||| || ||||||
Sbjct 5791 CCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTC 5850
Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|||||||||||||||| | || || || ||||| ||||||||||| || || || ||
Sbjct 5851 TTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAA 5909
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCC 794517
| |||| || |||| || ||||| || | ||| | |||||||||||| | |||
Sbjct 5910 GGCGACAAGACGCTGAGCGAAAGT-----GGACTTCTGGTCGTTGATCCACTTGAGGGCC 5964
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 5965 CAGTCGGCCTTCTT 5978
Score = 113 bits (124), Expect = 7e-19
Identities = 175/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
||||||| ||||| || ||| | || ||| ||| || |||||||||||||| | |
Sbjct 5468 TGACGCCAGCCTTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 5527
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || || ||| | | |||| ||| || ||||
Sbjct 5528 GGGAGATGTTCTCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGA 5587
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| |||||||| || |||||||||||||| ||||||| || ||||
Sbjct 5588 GGGTAACCAGCAGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCA 5647
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
| |||| ||| | |||||| | |||| ||| ||||| | ||| |||| |||||| |
Sbjct 5648 TCCCGAGGAGACCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGT 5707
Query 794131 CGATGATGAT 794140
||| |||||
Sbjct 5708 CGACAATGAT 5717
>seq70
Length=220282
Score = 116 bits (128), Expect = 6e-20
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578
|| |||| || |||||||||||| ||| |||||| | | || | ||||| ||||||
Sbjct 168638 GGCTGGAAGGTTGAGCGCCACCTGATCACTGGCGACTACATCATCTTCAACCGTCAGCCG 168579
Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCCGGTCGCACCTT 429637
||||| |||| || ||| ||| | |||| || | | | | ||||| ||||||
Sbjct 168578 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTTCGCGTC-ATGCCGTACTCCACCTT 168520
Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697
||| ||||||||| |||| ||| |||||||||| || || || || |||||||||||
Sbjct 168519 CCGTCTCAACCTGTCCGTCACGTCGCCCTACAACGCTGATTTCGATGGTGACGAGATGAA 168460
Query 429698 CCTGCACGTGCCCCAG 429713
||| ||||| || |||
Sbjct 168459 CCTCCACGTTCCTCAG 168444
>seq15
Length=343365
Score = 116 bits (128), Expect = 6e-20
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||| ||||| ||||||||||| || ||||| | || |||||||| || ||||||
Sbjct 331170 GCCTCCAATTACCTGGACATCAAGCCACTTCTCGACGTCGGATGCAAGACGGTCGCCAAC 331229
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || ||||| ||||||||||| || |||||||
Sbjct 331230 ATGATCAAGGGCAAGTCCCCTGAGGAGATCCGCAAGACATTCAACATCA 331278
>seq98
Length=184439
Score = 96.9 bits (106), Expect = 5e-14
Identities = 235/351 (67%), Gaps = 5/351 (1%)
Strand=Plus/Plus
Query 2175039 GCGGCGGTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAAC 2175098
||||||| | | |||||||| || ||| | ||||||||||||||||||| ||
Sbjct 68571 GCGGCGGCACCAATGGCATCGATAGCAACACCCAGGTTGCCGTCGGTGCCGTTTTTGAAA 68630
Query 2175099 CCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGC 2175158
||||| || || | ||| | || |||| |||||||||| ||| ||||||||||||
Sbjct 68631 CCGACGGGGAAGGACAGGCCGGAAGCCAGCTCGCGGTGCAGCTGAGACTCGGTGGTGCGG 68690
Query 2175159 GCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGA 2175218
||||| | ||| ||| | | || ||| || | | ||| | | | |||
Sbjct 68691 GCGCCAATGGCACCCACGGAGATGAAGTCGGCAAGGAACTGCGGGGAGATGGTGTCGAGC 68750
Query 2175219 AACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGAT 2175278
| |||| || | |||| |||| | ||| | |||||||| | || | |||||
Sbjct 68751 ATCTCGCTGGCAATGGGCATGCCG--GCCGA-GGTCAGGTCGCTGAAGAGCTGGCGCGA- 68806
Query 2175279 GTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCC 2175337
| ||| ||||| | | | | | ||||| || |||||| || ||| ||
Sbjct 68807 GACGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGATCAGACC 68866
Query 2175338 CTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCAC 2175388
|||||| ||||| || ||||| ||||| || | |||||||||||||| ||
Sbjct 68867 CTTCCAGCCGACAGTGGTGCGTGGCTTCTCCAGGTAGGCGCGCATGACGAC 68917
>seq20
Length=326219
Score = 87.8 bits (96), Expect = 3e-11
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGTCAGA-CGAGGC 2233149
|||||||| ||||| || ||||| || ||||| || || ||||| | | || ||| ||
Sbjct 224724 GTCGCCTTCCCCACAGAAACCGTGTACGGCCTGGGTGCGGACGCCACC-CGGAGCGATGC 224782
Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209
||| || |||||| |||||||||||| |||||| |||||||| ||||| ||||||
Sbjct 224783 GGTAAAGGGCATCTACTCCGCCAAGGGCCGGCCGTCCGACAACCCGCTCATCTCGCACGT 224842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916048862440223
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |