Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq137 138 7e-28
seq1 107 1e-18
seq126 98.7 6e-16
>seq137
Length=159453
Score = 138 bits (152), Expect = 7e-28
Identities = 164/220 (75%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 53352 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 53293
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| || |||||||| | || | |||||||||||
Sbjct 53292 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 53233
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || |||| ||| |
Sbjct 53232 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 53177
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
| ||||| |||||||||||||| || ||||||||||||||
Sbjct 53176 TAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 53137
>seq1
Length=623116
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| || || || || |||| |||| || ||||| |||||||||||
Sbjct 264917 CTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAA 264858
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || || |||||||| | || | ||||||||||| | || || ||||||
Sbjct 264857 GATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTT 264798
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | |||||| || | || |||||||| || || || ||||| ||
Sbjct 264797 GTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGAC 264738
Query 34966 AAAGATCTGCAT 34977
|| ||||||||
Sbjct 264737 GAAAATCTGCAT 264726
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| || || |||||| | || |||| |||| ||||| || |||||
Sbjct 265145 CTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAA 265086
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || ||||||||||| | || | ||||||||||| | || || || || |
Sbjct 265085 GATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCAC--A 265028
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| | ||||| || | |||||| || | || || ||||| || || | |||||
Sbjct 265027 T--TGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCT 264970
Query 34962 TTACAAAGATCTGCAT 34977
| || || || |||||
Sbjct 264969 TGACGAAAATTTGCAT 264954
>seq126
Length=166795
Score = 98.7 bits (108), Expect = 6e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| | || || || ||||| || |||||||
Sbjct 82595 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGA 82536
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 82535 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 82476
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || ||| || || | ||| |||||||| ||||| |||||||| || |
Sbjct 82475 CGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGA 82416
Query 34968 AG 34969
||
Sbjct 82415 AG 82414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325685428859483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |