Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 4e-13
>seq1
Length=623116
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| || | || || || || |||||||| ||||| | | |||||| |
Sbjct 264940 CGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCA 264881
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || |||||||| || || | || | | ||||| || || ||||||||||| |||
Sbjct 264880 TCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTG 264821
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || ||| || | ||||| | || | || || ||| || || || | ||| ||
Sbjct 264820 TCCTG-AATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAAT 264762
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | || || || || ||||||||
Sbjct 264761 GGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385210481646837
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |