Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 5e-29
>seq1
Length=623116
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | || || || ||||||| |||||| || ||||| || || ||||| |
Sbjct 264954 TACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGG 264895
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||| || || ||||||||||| || ||||| || | || || || ||||
Sbjct 264894 AGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAG 264835
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || |||||||| | || || || || || ||||| || || |
Sbjct 264834 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGA 264775
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||||||| || |||||||| |||| ||||| || || ||||||||
Sbjct 264774 CCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Score = 136 bits (150), Expect = 8e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || |||||||| || || || ||||| || || ||||| ||||| | | |||
Sbjct 265169 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACC 265110
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || | || || ||||| ||||| || | ||| || || ||||| || || |||||
Sbjct 265109 ATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTT 265050
Query 82715 ATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773
|| || ||||| ||| || ||||| || || || || || || ||||||||||| |
Sbjct 265049 GTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGA 264991
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||| ||||| ||||| || || || |||||
Sbjct 264990 TCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981803839569523
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |