Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq298 325 4e-84 seq137 129 6e-25 seq1 116 4e-21 seq126 104 2e-17 >seq298 Length=101239 Score = 325 bits (360), Expect = 4e-84 Identities = 1036/1578 (66%), Gaps = 59/1578 (4%) Strand=Plus/Plus Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 ||||| ||||| | || || | |||| || ||||| |||||||| ||||| ||||| Sbjct 54860 CTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCG 54919 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 ||| | || | |||| || | ||||| || ||||||||||||||| |||||||| Sbjct 54920 GCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGA 54979 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 || |||| ||||||||| || || ||||| |||||| | ||| | | || | Sbjct 54980 AGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGA- 55038 Query 148412 TTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | ||| | |||| || ||||||||||||| || || | |||| ||||||||||| Sbjct 55039 TCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGT 55098 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| ||||| || | | | ||| ||| ||||||||| ||| | || | || Sbjct 55099 ACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCT 55158 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | |||| | ||| ||| ||| ||| || |||||| || | | ||| Sbjct 55159 GCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGT 55218 Query 148591 TGAG-----CAGC-GCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 |||| ||| | || ||| ||| | ||||| ||||| | ||||| | Sbjct 55219 TGAGGTCTCGAGCTTCAGCAGAC------TCGAAGGGCATGCGCAGGGCAAGGAACGCAT 55272 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| ||||| | || ||||| || || |||||| | || || | Sbjct 55273 CAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGC-C 55331 Query 148705 TCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTT 148762 || || | || ||||||||| ||| |||||| || ||||| ||||| || || |||| Sbjct 55332 TCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAG-TTGCGGACGACAACCTG 55390 Query 148763 TGTAA--TTCTGC----GCAGCAATTCAAA---ATCGTACTTGTCATCTACGATGCATCG 148813 || | | ||| | | || ||| | | | |||| || |||| | | | Sbjct 55391 GGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAG-GTGG 55449 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 | || ||| | ||| || || ||||| ||||| |||||| || || |||||| | Sbjct 55450 G--CAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGAT 55507 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||| || | ||| || ||| || ||| || | |||||| || |||||||||| Sbjct 55508 GATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCG 55567 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||| |||||||||||||||||| | || ||| || ||| ||||| || | || Sbjct 55568 GTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT 55627 Query 148994 ---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT---G 149044 | ||| ||| | ||| || |||| || || | |||||||| ||| | Sbjct 55628 GGCGTACC---ACAGCTTCTGGGC-----CTTGATGGTC-TTGCGACCCTTACCCTCGCG 55678 Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||||| |||| | ||| ||| |||||||||| || ||| |||| |||| ||| Sbjct 55679 CTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCA 55738 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || || || |||||||| | ||| | |||| | | || | |||||| || ||||| Sbjct 55739 CTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATC 55798 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | ||| || ||| | || ||||| || | || || ||| ||| Sbjct 55799 AGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTT 55858 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 ||| || | ||| | ||| | || |||||||| ||||||| ||| | |||| || Sbjct 55859 GCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGC 55918 Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || |||||| ||||| |||||||| | ||| | ||||||| || || || | Sbjct 55919 ACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAG 55978 Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCG 149401 |||||| | | || ||| || ||||| || ||| ||| | || Sbjct 55979 CATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACG 56038 Query 149402 CACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCG 149459 | || ||||||| |||||||| || ||| | ||| || || ||||| ||| Sbjct 56039 AATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT-CTTGGAAATCATGGCGCACGTC- 56096 Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519 ||| || ||||||||| |||||| ||| |||||| | || |||||||| Sbjct 56097 TTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAA 56156 Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATA 149578 ||| ||| | | | |||||||| ||||| ||||| ||| || || || | Sbjct 56157 GACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGC 56216 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || | ||||| | ||||| ||||| ||||| || | || || || ||||| Sbjct 56217 TTGCTCG-ACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCC 56275 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | ||||| ||||| | ||| || ||||| | ||| || | ||| | || ||||| Sbjct 56276 AACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAG 56335 Query 149699 CAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | ||| | | | | | || |||||| |||| ||||| | ||||| ||||| ||| ||| Sbjct 56336 GAGGTACGACCTCTCCAAG-GTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGT 56394 Query 149758 GGTCAATGGCGGCGTCGA 149775 | |||| || | ||||| Sbjct 56395 AGACAATCGCCGAGTCGA 56412 >seq137 Length=159453 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| |||||| ||||||||||| Sbjct 53337 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCC 53278 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 53277 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 53218 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 53217 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 53158 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 53157 CTTGACGAAGATCTGCATG 53139 >seq1 Length=623116 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | |||| ||| | ||||| || || || || Sbjct 264922 GTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCA-TCCTCAAGTTGTTTTCC 264864 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| ||||| || || |||||||| ||||| ||| Sbjct 264863 GGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 264804 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || || | || | ||| |||||||||||||| Sbjct 264803 GACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGT 264744 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 264743 CTTGACGAAAATCTGCAT 264726 Score = 109 bits (120), Expect = 5e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| |||| | ||| ||| | ||||| ||||||||||| Sbjct 264694 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 264636 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||||||||||||||| || |||||||| ||||| ||| Sbjct 264635 AGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTT 264576 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | || |||| || ||| || |||| |||| ||| || ||||| Sbjct 264575 GACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 264522 >seq126 Length=166795 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || | |||||||||||||| |||||||| ||||| Sbjct 82561 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 82502 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || |||| ||| | Sbjct 82501 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAAT 82442 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651 ||| || || ||||| || || ||||| Sbjct 82441 GGTCTTACCCGTCAGGGTCTTAACGAA 82415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409578594680