Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq298 325 4e-84
seq137 129 6e-25
seq1 116 4e-21
seq126 104 2e-17
>seq298
Length=101239
Score = 325 bits (360), Expect = 4e-84
Identities = 1036/1578 (66%), Gaps = 59/1578 (4%)
Strand=Plus/Plus
Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291
||||| ||||| | || || | |||| || ||||| |||||||| ||||| |||||
Sbjct 54860 CTCGACAAGGTCCTTGAGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCG 54919
Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351
||| | || | |||| || | ||||| || ||||||||||||||| ||||||||
Sbjct 54920 GCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGA 54979
Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411
|| |||| ||||||||| || || ||||| |||||| | ||| | | || |
Sbjct 54980 AGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGA- 55038
Query 148412 TTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470
| ||| | |||| || ||||||||||||| || || | |||| |||||||||||
Sbjct 55039 TCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGT 55098
Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530
|||| ||||| || | | | ||| ||| ||||||||| ||| | || | ||
Sbjct 55099 ACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCT 55158
Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590
||||| | |||| | ||| ||| ||| ||| || |||||| || | | |||
Sbjct 55159 GCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGT 55218
Query 148591 TGAG-----CAGC-GCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644
|||| ||| | || ||| ||| | ||||| ||||| | ||||| |
Sbjct 55219 TGAGGTCTCGAGCTTCAGCAGAC------TCGAAGGGCATGCGCAGGGCAAGGAACGCAT 55272
Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704
| ||||||||||| ||||| | || ||||| || || |||||| | || || |
Sbjct 55273 CAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGC-C 55331
Query 148705 TCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTT 148762
|| || | || ||||||||| ||| |||||| || ||||| ||||| || || ||||
Sbjct 55332 TCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAG-TTGCGGACGACAACCTG 55390
Query 148763 TGTAA--TTCTGC----GCAGCAATTCAAA---ATCGTACTTGTCATCTACGATGCATCG 148813
|| | | ||| | | || ||| | | | |||| || |||| | | |
Sbjct 55391 GGTGACCTCGTGCAACTTCTGGAAGTCATAGGTGCCTTCGTTGTAGTCAACGAAG-GTGG 55449
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
| || ||| | ||| || || ||||| ||||| |||||| || || |||||| |
Sbjct 55450 G--CAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGAT 55507
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
||| || | ||| || ||| || ||| || | |||||| || ||||||||||
Sbjct 55508 GATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCG 55567
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993
|||| |||||||||||||||||| | || ||| || ||| ||||| || | ||
Sbjct 55568 GTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT 55627
Query 148994 ---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT---G 149044
| ||| ||| | ||| || |||| || || | |||||||| ||| |
Sbjct 55628 GGCGTACC---ACAGCTTCTGGGC-----CTTGATGGTC-TTGCGACCCTTACCCTCGCG 55678
Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104
|||||| |||| | ||| ||| |||||||||| || ||| |||| |||| |||
Sbjct 55679 CTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGCCGGAGCA 55738
Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164
|| || || |||||||| | ||| | |||| | | || | |||||| || |||||
Sbjct 55739 CTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATC 55798
Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224
|| | ||| || ||| | || ||||| || | || || ||| |||
Sbjct 55799 AGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTT 55858
Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284
||| || | ||| | ||| | || |||||||| ||||||| ||| | |||| ||
Sbjct 55859 GCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGC 55918
Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341
|| |||||| ||||| |||||||| | ||| | ||||||| || || || |
Sbjct 55919 ACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAG 55978
Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCG 149401
|||||| | | || ||| || ||||| || ||| ||| | ||
Sbjct 55979 CATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAACG 56038
Query 149402 CACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCG 149459
| || ||||||| |||||||| || ||| | ||| || || ||||| |||
Sbjct 56039 AATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT-CTTGGAAATCATGGCGCACGTC- 56096
Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519
||| || ||||||||| |||||| ||| |||||| | || ||||||||
Sbjct 56097 TTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAA 56156
Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATA 149578
||| ||| | | | |||||||| ||||| ||||| ||| || || || |
Sbjct 56157 GACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAGC 56216
Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638
|| || | ||||| | ||||| ||||| ||||| || | || || || |||||
Sbjct 56217 TTGCTCG-ACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCC 56275
Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698
| ||||| ||||| | ||| || ||||| | ||| || | ||| | || |||||
Sbjct 56276 AACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAG 56335
Query 149699 CAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757
| ||| | | | | | || |||||| |||| ||||| | ||||| ||||| ||| |||
Sbjct 56336 GAGGTACGACCTCTCCAAG-GTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGT 56394
Query 149758 GGTCAATGGCGGCGTCGA 149775
| |||| || | |||||
Sbjct 56395 AGACAATCGCCGAGTCGA 56412
>seq137
Length=159453
Score = 129 bits (142), Expect = 6e-25
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| |||||| |||||||||||
Sbjct 53337 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCC 53278
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 53277 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 53218
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 53217 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 53158
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 53157 CTTGACGAAGATCTGCATG 53139
>seq1
Length=623116
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||||||| | |||| ||| | ||||| || || || ||
Sbjct 264922 GTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCA-TCCTCAAGTTGTTTTCC 264864
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||||||||| ||||| || || |||||||| ||||| |||
Sbjct 264863 GGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 264804
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || || | | ||| || || | || | ||| ||||||||||||||
Sbjct 264803 GACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGT 264744
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 264743 CTTGACGAAAATCTGCAT 264726
Score = 109 bits (120), Expect = 5e-19
Identities = 130/174 (75%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
||||| || || || || ||||| |||| | ||| ||| | ||||| |||||||||||
Sbjct 264694 GTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 264636
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || |||||||||||||||||||| || |||||||| ||||| |||
Sbjct 264635 AGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTT 264576
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| | || | || |||| || ||| || |||| |||| ||| || |||||
Sbjct 264575 GACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 264522
>seq126
Length=166795
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| |||||||| || ||| | || | |||||||||||||| |||||||| |||||
Sbjct 82561 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 82502
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||| | || ||| || |||| ||| |
Sbjct 82501 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAAT 82442
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651
||| || || ||||| || || |||||
Sbjct 82441 GGTCTTACCCGTCAGGGTCTTAACGAA 82415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483409578594680
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