Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 1e-18
>seq1
Length=623116
Score = 109 bits (120), Expect = 1e-18
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || ||||||||||||||||| || ||| ||||| |||| || |||
Sbjct 264978 ACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCAGACACCATCGACAATGTGAAGAGC 265037
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || ||| || ||| ||| | ||||||||||| || |||
Sbjct 265038 AAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTCTTATCTTCGCTGGCAAG 265097
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| ||||| | || | ||||||||||| ||||||| ||||| || || |||
Sbjct 265098 CAGTTGGAGGATGGTCGTACCCTATCCGATTACAACATCCAGAAGGAGTCGACGCTGCAC 265157
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || || || || || |||||||| || || ||| ||
Sbjct 264729 CAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCGGAT 264788
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || ||| || ||| ||
Sbjct 264789 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 264848
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||||||||| || | || ||||| | || | ||||||||||| |
Sbjct 264849 CGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAACATT 264908
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||||||| | |||
Sbjct 264909 CAGAAGGAGTCTACTTTGCAC 264929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181792681159297
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |