Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq298 201 1e-46
seq653 91.5 1e-13
>seq298
Length=101239
Score = 201 bits (222), Expect = 1e-46
Identities = 992/1543 (64%), Gaps = 47/1543 (3%)
Strand=Plus/Plus
Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950
||||||| || || |||||||| || || || || | | || | ||| ||| |||
Sbjct 54886 GATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAG 54945
Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010
| || || |||| || ||||| | || || | ||| |||| || |||||| || |
Sbjct 54946 GTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAA 55005
Query 147011 CCAACAATGAATTTCGCAGAC--CGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068
| | || || | | || ||| ||| | ||| | || ||||||| | ||||||
Sbjct 55006 CGAGCA--GACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTC 55063
Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCG---ACTGG 147124
||| | |||||| | |||| |||||||||||||||||| | | ||| | || |
Sbjct 55064 CCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAG- 55122
Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG--CTTGC 147182
|||| ||| || ||| | |||| | || || ||||||||| | ||| | ||
Sbjct 55123 -GGGA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATG- 55178
Query 147183 CTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTC 147242
||| || | | ||| ||||| ||| ||| | ||||| ||| | ||||| |
Sbjct 55179 -GTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGC 55237
Query 147243 GCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCC 147302
|||| | ||||| ||||| | || ||||| || | ||||||| |||| ||
Sbjct 55238 AGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACC 55297
Query 147303 GATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGA 147360
||| || ||||| |||||| | | || || || | || |||||||||
Sbjct 55298 GATGGGGCGATGGCGCATGTTGCT--GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACG 55355
Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420
||||| ||| |||| | ||| || || ||||| | || | | | |||| |||
Sbjct 55356 TCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAG 55415
Query 147421 TCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480
||||| || || || | | ||| | | || ||| | ||| ||||| ||||||
Sbjct 55416 TCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAG 55475
Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539
||||| ||| || |||| || ||||| | |||||| | ||| |||||| ||
Sbjct 55476 ACGGCAACCTCATCAGGCGCCG-AGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCG 55534
Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599
||| || | || | ||| ||||| || || ||| ||||| ||| | |||||| |
Sbjct 55535 GATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 55594
Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658
|| ||| ||||| |||| |||| ||| | || ||| | ||| || |
Sbjct 55595 GGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT-GGCGTACCACAGCTTCTGGGCCTTGA 55653
Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718
|| ||| |||||| |||||| |||||||||| ||||||||| ||||
Sbjct 55654 TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGC 55713
Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778
|||| || ||||| ||||||| |||| | |||||||| || | ||| ||| |
Sbjct 55714 CGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCT 55773
Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838
| || | ||| || ||||| || | ||| || ||| | ||||||||| ||
Sbjct 55774 TCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCAC 55833
Query 147839 TGCAATCCTCGGCGCCCATGTTGCGTTTCAA-AT-TAAGCACGCTATAGATGTCGGCGTG 147896
| ||||| | || || | | | || || | | || | | ||| ||||||||
Sbjct 55834 GGACCTCCTCCTTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTG 55891
Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953
|||||| |||| ||||| ||| | ||||| ||| || ||||| ||||||||||
Sbjct 55892 CCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATA 55951
Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
||| | ||||||| || || |||| ||| || | | ||| | | || ||||||||
Sbjct 55952 GCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGT 56011
Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC-G 148071
| ||| | | ||| || || | | || || ||||| | || ||||| || |
Sbjct 56012 GCCCGCGATGTAGGAGCCAGTGGAACG-AATGCGATGGACGTTGAGACCGATGCCTCCAG 56070
Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129
|| | ||| || || ||||| || | | || ||||||||| |||||| ||
Sbjct 56071 CCAT-CTTGGAAATCATGGCGCA--CGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGT 56127
Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AG 148188
| | || | | | | || |||||| ||| ||| || | | | | ||| || |
Sbjct 56128 CCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTG 56186
Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246
|| || ||||| || || || |||| || | || ||||| | |||||||| |
Sbjct 56187 AACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGA--CATCAAGTTGTACGTCTCGA 56244
Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306
|| || || | || ||| || |||||| | ||||| ||||| | |||||| || |
Sbjct 56245 TAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCG 56304
Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365
| | ||||||| |||| | ||||||||| || || | || | ||| ||| |
Sbjct 56305 GCCTCTCGGCAATCTTG-CCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAG 56363
Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||||| | ||| | || || | ||||| | || ||||
Sbjct 56364 CCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCG 56406
>seq653
Length=48578
Score = 91.5 bits (100), Expect = 1e-13
Identities = 328/507 (65%), Gaps = 7/507 (1%)
Strand=Plus/Minus
Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817
|| || ||| ||||||| |||||| | |||||| | ||||||||| | | ||| ||
Sbjct 5993 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 5934
Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877
|| | || |||| | || || ||||| || || ||| | || || || ||
Sbjct 5933 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 5874
Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937
||||| |||| |||| | || | || | ||||| |||||||| ||| ||
Sbjct 5873 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 5814
Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997
|| | ||||| |||||||||||||| ||||| || ||||| || || ||| |
Sbjct 5813 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTAC---TCC 5757
Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGC 47057
| | |||| | | | | | |||| | ||| || || || || |
Sbjct 5756 CACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAG 5697
Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117
|| || ||||||| | || | ||| |||||| || | || || ||||| | ||
Sbjct 5696 ATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTC-CAA 5638
Query 47118 TCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176
|| ||| | || ||||| |||||||| || |||||| |||| ||||| |||
Sbjct 5637 CCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGG-CAATG 5579
Query 47177 GAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235
||| | | || | | ||||| ||||| |||||| | ||||| || || | ||||
Sbjct 5578 AAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCA 5519
Query 47236 AAACCAATTTTTTCGAGAAACGAGTCG 47262
| ||||| || || ||||| || ||||
Sbjct 5518 AGACCAACTTCTTTGAGAAGCGTGTCG 5492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476600136662520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |