Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq298 201 1e-46 seq653 91.5 1e-13 >seq298 Length=101239 Score = 201 bits (222), Expect = 1e-46 Identities = 992/1543 (64%), Gaps = 47/1543 (3%) Strand=Plus/Plus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 ||||||| || || |||||||| || || || || | | || | ||| ||| ||| Sbjct 54886 GATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAG 54945 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 | || || |||| || ||||| | || || | ||| |||| || |||||| || | Sbjct 54946 GTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAA 55005 Query 147011 CCAACAATGAATTTCGCAGAC--CGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 | | || || | | || ||| ||| | ||| | || ||||||| | |||||| Sbjct 55006 CGAGCA--GACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTC 55063 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCG---ACTGG 147124 ||| | |||||| | |||| |||||||||||||||||| | | ||| | || | Sbjct 55064 CCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAG- 55122 Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG--CTTGC 147182 |||| ||| || ||| | |||| | || || ||||||||| | ||| | || Sbjct 55123 -GGGA--GCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATG- 55178 Query 147183 CTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTC 147242 ||| || | | ||| ||||| ||| ||| | ||||| ||| | ||||| | Sbjct 55179 -GTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGC 55237 Query 147243 GCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCC 147302 |||| | ||||| ||||| | || ||||| || | ||||||| |||| || Sbjct 55238 AGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACC 55297 Query 147303 GATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGA 147360 ||| || ||||| |||||| | | || || || | || ||||||||| Sbjct 55298 GATGGGGCGATGGCGCATGTTGCT--GTTACGGGCCTCCTGAACAGGGTAGTGGTTGACG 55355 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 ||||| ||| |||| | ||| || || ||||| | || | | | |||| ||| Sbjct 55356 TCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAG 55415 Query 147421 TCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 ||||| || || || | | ||| | | || ||| | ||| ||||| |||||| Sbjct 55416 TCATAGGTGCCTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAG 55475 Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 ||||| ||| || |||| || ||||| | |||||| | ||| |||||| || Sbjct 55476 ACGGCAACCTCATCAGGCGCCG-AGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCG 55534 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| || | || | ||| ||||| || || ||| ||||| ||| | |||||| | Sbjct 55535 GATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 55594 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658 || ||| ||||| |||| |||| ||| | || ||| | ||| || | Sbjct 55595 GGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGAT-GGCGTACCACAGCTTCTGGGCCTTGA 55653 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || ||| |||||| |||||| |||||||||| ||||||||| |||| Sbjct 55654 TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGC 55713 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 |||| || ||||| ||||||| |||| | |||||||| || | ||| ||| | Sbjct 55714 CGTAACAGTCGGCGAGGCCGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCT 55773 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838 | || | ||| || ||||| || | ||| || ||| | ||||||||| || Sbjct 55774 TCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCAC 55833 Query 147839 TGCAATCCTCGGCGCCCATGTTGCGTTTCAA-AT-TAAGCACGCTATAGATGTCGGCGTG 147896 | ||||| | || || | | | || || | | || | | ||| |||||||| Sbjct 55834 GGACCTCCTCCTTG-CCGTGGTTCTTGCGAAGATCGAGGAACTCGA-AGACATCGGCGTG 55891 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 |||||| |||| ||||| ||| | ||||| ||| || ||||| |||||||||| Sbjct 55892 CCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATA 55951 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||| | ||||||| || || |||| ||| || | | ||| | | || |||||||| Sbjct 55952 GCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGT 56011 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC-G 148071 | ||| | | ||| || || | | || || ||||| | || ||||| || | Sbjct 56012 GCCCGCGATGTAGGAGCCAGTGGAACG-AATGCGATGGACGTTGAGACCGATGCCTCCAG 56070 Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129 || | ||| || || ||||| || | | || ||||||||| |||||| || Sbjct 56071 CCAT-CTTGGAAATCATGGCGCA--CGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGT 56127 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AG 148188 | | || | | | | || |||||| ||| ||| || | | | | ||| || | Sbjct 56128 CCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGGGTGCCGGCGTTG 56186 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246 || || ||||| || || || |||| || | || ||||| | |||||||| | Sbjct 56187 AACAGAGTGGGCGAGGCATGGGTGAACAGCTTGCTCGA--CATCAAGTTGTACGTCTCGA 56244 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 || || || | || ||| || |||||| | ||||| ||||| | |||||| || | Sbjct 56245 TAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCG 56304 Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 | | ||||||| |||| | ||||||||| || || | || | ||| ||| | Sbjct 56305 GCCTCTCGGCAATCTTG-CCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAG 56363 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||||| | ||| | || || | ||||| | || |||| Sbjct 56364 CCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATCGCCG 56406 >seq653 Length=48578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 328/507 (65%), Gaps = 7/507 (1%) Strand=Plus/Minus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| ||||||| |||||| | |||||| | ||||||||| | | ||| || Sbjct 5993 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCC 5934 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || |||| | || || ||||| || || ||| | || || || || Sbjct 5933 ACTTTCGCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCC 5874 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 ||||| |||| |||| | || | || | ||||| |||||||| ||| || Sbjct 5873 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAAT 5814 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 || | ||||| |||||||||||||| ||||| || ||||| || || ||| | Sbjct 5813 GAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTAC---TCC 5757 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGC 47057 | | |||| | | | | | |||| | ||| || || || || | Sbjct 5756 CACCTGAAGCACCGCCCCAGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAG 5697 Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 || || ||||||| | || | ||| |||||| || | || || ||||| | || Sbjct 5696 ATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGTCTCCTCGGGATGAATTC-CAA 5638 Query 47118 TCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176 || ||| | || ||||| |||||||| || |||||| |||| ||||| ||| Sbjct 5637 CCTCATGAAGCAGTACATTGAATTTGTGGCCGACCGTCTGCTGGTTACCCTCGG-CAATG 5579 Query 47177 GAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235 ||| | | || | | ||||| ||||| |||||| | ||||| || || | |||| Sbjct 5578 AAAAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATGGAGAACATCTCCCTTGGTGGCA 5519 Query 47236 AAACCAATTTTTTCGAGAAACGAGTCG 47262 | ||||| || || ||||| || |||| Sbjct 5518 AGACCAACTTCTTTGAGAAGCGTGTCG 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600136662520