Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq298 159 5e-33 seq653 129 8e-24 seq129 125 1e-22 seq531 87.8 3e-11 >seq298 Length=101239 Score = 159 bits (176), Expect = 5e-33 Identities = 340/504 (67%), Gaps = 23/504 (5%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| |||||| | || || | ||| ||| ||||| |||| ||||| Sbjct 56425 CACAAGGAGGAGCTCGACTCGGCGATTGTCTACGACCGTGACTTCAACTACCAATACTTC 56366 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGC---GCGATATTGTCGTCGAG 259798 || | ||||||| |||| ||||| ||| | || | |||| || || Sbjct 56365 GGCTTCAAGACCTTGGAGAGGTCGTACCTCCTCAAGATCGATGGCAAGATTGCCG---AG 56309 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 |||| || | ||| | ||||||||||| ||||| ||| |||| ||| Sbjct 56308 AGGCCGCAACACATGATTATGCGTGTCGCTGTTGGC-ATTTGGGGT-----------GAC 56261 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTC 259917 || | | |||| ||| ||| || ||| | |||||| |||| | |||||||| Sbjct 56260 AACG---TTGAGCGCGTTATCGAGACGTACAACTTGATGTCG-AGCAAGCTGTTCACCCA 56205 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || ||||||| || || || |||||||| || | | || || |||||||| || Sbjct 56204 TGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCT 56145 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | || ||||||| || || ||||| |||||||| ||||| |||||| |||||| | Sbjct 56144 CGTCGATATGAAGGAGGACTCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCAT 56085 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 || |||||| ||| || ||||||||| | || || | || || | ||| | Sbjct 56084 GATTTCCAAGATGGCTGGAGGCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTC 56025 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 |||| | |||||||||||||| |||||||| | || || ||||| || || || || Sbjct 56024 CTACATCGCGGGCACCAACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAA 55965 Query 260158 CGACACGGCGCGCTACGTCGACCA 260181 | |||| || ||||| |||||||| Sbjct 55964 CAACACCGCTCGCTATGTCGACCA 55941 Score = 89.7 bits (98), Expect = 7e-12 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| | | ||| || | ||||| |||| |||| |||| | ||||||||| Sbjct 55636 TGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTGTACAAGGAC 55577 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 |||| ||||| | ||||||||| ||||||| || |||| | ||| ||||||| || Sbjct 55576 GCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAG-CTCCAACCTTTG 55518 Query 262216 CACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGT 262275 ||| || ||| || ||| ||| |||| |||| || |||||||| | | Sbjct 55517 CACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCTCT 55458 Query 262276 GGCCCTGCCCA 262286 ||||||||||| Sbjct 55457 GGCCCTGCCCA 55447 >seq653 Length=48578 Score = 129 bits (142), Expect = 8e-24 Identities = 211/299 (71%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| || || ||||||||||||||| | ||| Sbjct 6383 GATTTGGCAAATGTAC-AAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACT 6325 Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | ||||| | | | | | |||||||||| |||||| Sbjct 6324 TGTCCAAGGACCTTCACGACTGGAATAACAAGATTAACGACGACGAGAAGTTCTTCATCT 6265 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||||||||| || ||| ||| || || || || ||||||||||| | Sbjct 6264 CTCACATCCTCGCCTTCTT-CGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAA 6206 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || ||||| | || ||||| |||| || ||||| ||||||||| Sbjct 6205 CGCTTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATG 6146 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || |||||||||||||| || ||||| || || || ||||| || ||| | ||||| || Sbjct 6145 ATGGAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTACATTAAGGAGCC 6087 Score = 111 bits (122), Expect = 2e-18 Identities = 145/192 (76%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAG 1456181 || |||||||||||||| | |||||||||||| | || || |||||| || || Sbjct 5978 AAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAG-TC--CACTTTCGCTCAG 5922 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || || |||| ||| || || || ||||||||||| ||||| || || |||| |||| Sbjct 5921 CGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTT-TGCGTCCAT 5863 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 |||||||||||||||||| || |||||||| || | | ||| ||| ||| | ||| Sbjct 5862 CTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGG-CCTGACCTTCTCCAATGAACTCATCT 5804 Query 1456300 GTCGCGACGAAG 1456311 ||||||||||| Sbjct 5803 CTCGCGACGAAG 5792 Score = 104 bits (114), Expect = 3e-16 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| ||||| |||||| |||| ||| | ||||| ||| |||| | ||||| | Sbjct 5717 ATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTGCCCTGCGGT 5658 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| |||| ||||| ||| | |||||| ||||||||||||||| || |||||||| | Sbjct 5657 CTCCTCGGGATGAATTCCAAC-CTCATGAAGCAGTACATTGAATTT-GTGGCCGACCGTC 5600 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | | |||||| | | ||| |||| | | ||| || || | ||| Sbjct 5599 TGCTGGTTACCCTCGGCAATGAA-AAGGTCTACAAGTCAAGCAATCCCTTTGACTTTATG 5541 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| || || | ||| ||| Sbjct 5540 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAG 5481 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| ||||||| Sbjct 5480 AAGGCTGGCGTCA 5468 >seq129 Length=166225 Score = 125 bits (138), Expect = 1e-22 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 ||||||||||| || || |||||| | |||||||| | | |||| ||||||||| Sbjct 39324 CGCAGGATGGCGCAGCGCGACTGCAGCGGCTCGATGATCTTGTTCGACTGGTTGCAGGCA 39383 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | || ||||||||||| |||| | ||||||| || ||||||||||| || || Sbjct 39384 AACGCGAACCGCGTCGTGTTGGAGTAGATTTCCATCGTTCGGCGGAGGGCCTGCTGCGCG 39443 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 ||| || | || |||||| ||||||||||||| | ||||||||| || |||||||| Sbjct 39444 CCCGATGTCATGCTGTCGGCTTCGTCGAGGATGACCAGCTTGTGGCGGCCCTGCGGCAG 39502 >seq531 Length=61705 Score = 87.8 bits (96), Expect = 3e-11 Identities = 158/229 (69%), Gaps = 18/229 (8%) Strand=Plus/Plus Query 2129647 TTGGGCGCGCCCGTCATCGAGCCTGGGGGAAAAGCCGCGCGCACGAGGTCCAGCGCCGTC 2129706 ||||||||||||||||| || || || || ||| || ||||| ||| |||| Sbjct 27034 TTGGGCGCGCCCGTCATGCTCCCCGGCGGCAAGCTCGCCGCCAGCAGGTCGAGCCCCGTG 27093 Query 2129707 TGT-TGTCGGTCC-----AACAGGCCGTCGACGGTGGTCACCATCTGGTGCACGGCGGCA 2129760 || | || |||| ||| | |||| ||| |||| | ||||||| ||||| ||| Sbjct 27094 TGCCTCTCCGTCCGCGGCAACTGCCCGTTGACAATGGTGATCATCTGGAACACGGTGGCG 27153 Query 2129761 TAGGTCTCGATCGCCATCAGCCGGCCGCGCGGCACGACGACGCTGCCGGGCGCGCAGCAC 2129820 || ||||| | |||||| | ||||||| ||| |||| || || ||| Sbjct 27154 TACTCCTCGACCTTCATCAG------GTGCGGCACCGTCACGTTGCC---CGAGCCGCAG 27204 Query 2129821 ACGCT---CAGGTCGTTGCGCACCAGATCGACGATCATGAGGTTCTCGG 2129866 |||| |||||||| ||| || || ||||| |||||||||||||||| Sbjct 27205 ACGCCGTGCAGGTCGTGGCGGACGAGGTCGACAATCATGAGGTTCTCGG 27253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177632088936834