Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 4e-27
seq137 132 5e-26
seq126 107 2e-18
seq298 98.7 1e-15
>seq1
Length=623116
Score = 136 bits (150), Expect = 4e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || |||||||||||||| ||||||||||||| | |||| || || ||
Sbjct 264706 ACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCA 264647
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || ||||||| |||||||| ||||| || || || || || || |||
Sbjct 264646 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 264587
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | || ||||| || || || |||||||| ||||| ||
Sbjct 264586 ATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 264527
Query 134685 CCGGT 134689
|||||
Sbjct 264526 CCGGT 264522
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | ||| | ||| | || || ||||| ||||||||||| |||
Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || || || ||||| || || || || | ||||||||| || || ||
Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | || || || || || ||
Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 264773
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||||||||| || ||||| | ||| || |||||||| |||||
Sbjct 264772 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| | ||| ||||| || ||||| || |||||||| |||
Sbjct 265180 CCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGAT 265121
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || || | ||| ||||| || || || | ||| ||||| || || ||
Sbjct 265120 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGA 265061
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || || || ||| | ||||| || || || ||
Sbjct 265060 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 265001
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||| || || || ||||| || || || ||||||||||||||
Sbjct 265000 TCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954
>seq137
Length=159453
Score = 132 bits (146), Expect = 5e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 53357 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 53298
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| || || ||||| |||||||| ||||| || ||||| ||
Sbjct 53297 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCC 53238
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | |||||||| || ||||| || || ||
Sbjct 53237 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 53178
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||| || | || || ||||| || |||||
Sbjct 53177 ATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 53140
>seq126
Length=166795
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 134521 ATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAA 134580
|| |||| || |||||||||||| | |||| | ||| || ||||| || || || |
Sbjct 82598 ATACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGA 82539
Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640
| ||||| |||||||| ||||| || ||||| || || || || || || |||||
Sbjct 82538 AGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 82479
Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700
||| | ||||| || || || || ||||| |||||||| ||||| || | || ||||
Sbjct 82478 TGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAA 82419
Query 134701 CGAA 134704
||||
Sbjct 82418 CGAA 82415
>seq298
Length=101239
Score = 98.7 bits (108), Expect = 1e-15
Identities = 278/421 (66%), Gaps = 7/421 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||||||| | |||| || || || |||||| || || || |||| || |
Sbjct 56302 CAACACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGACAACGTTGAGCGCGTTATC 56243
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| |||||| | ||||||| || | ||| || || || |||||||| |||| |
Sbjct 56242 GAGACGTACAACTTGATGTCGAGCAAGCTGTTCACCCATGCCTCGCCCACTCTGTTCAAC 56183
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
|| ||||| | | ||| |||| ||||| || | | ||| || ||| |
Sbjct 56182 GCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCC 56123
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGAT-TGCGCCAATATTTCCAAATACGGC-GGCG 7801
||||| ||||| ||| |||| || | || ||||||| |||||||| | ||| || |
Sbjct 56122 ATCGAAGGCATCTACGACACCCT-CAAGACGTGCGCCATGATTTCCAAG-ATGGCTGGAG 56065
Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861
| || ||||| ||||| | | | || ||| || | ||||| | ||||||||
Sbjct 56064 GCATCGGTCTCAACGTCCATCGCATTCGTTCCACTGGCTCCTACATCGCGGGCACCAACG 56005
Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921
||| ||| |||| | | || ||| |||| || ||||| ||| | | || |||| |
Sbjct 56004 GAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCG 55945
Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978
|||| || || ||||| || ||| |||||||| | ||||| |||||||| |
Sbjct 55944 ACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCG 55885
Query 7979 A 7979
|
Sbjct 55884 A 55884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505386668439640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |