Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq653 91.5 2e-13 >seq653 Length=48578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 39658 TTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGC 39717 ||| || || || || || |||||||| ||||||||||| ||||||||||| |||| || Sbjct 5811 TTCATTGGAGAAGGTCAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGC 5870 Query 39718 AAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||| | || || ||||||||||| || || || || || || ||||| Sbjct 5871 AAAGGCACCGGAGAAGAAGATGCCCTCAACAGCAGCGAAGGCGACAAG 5918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892855129480