Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq653 93.3 3e-14 >seq653 Length=48578 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAA--TTCA-AATGATTCTTTTGGAGAACGACTT 44134 || || ||||||||||| || ||||| || || || |||| | | || ||| Sbjct 5975 AAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTCCACTTTCGCTCAGCGTCTT 5916 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 ||||| || || | ||| || ||||| ||||| || || | |||||| |||| |||||| Sbjct 5915 GTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTTTGG 5856 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| || ||| | |||||||| |||| || || ||||| | || ||| || Sbjct 5855 CTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGCGAC 5796 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| | || ||||||||| ||| || Sbjct 5795 GAAGGACTGCACACCGATTTTGCCTGCCTG 5766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447004701285