Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq298 96.9 3e-15
seq1 87.8 2e-12
>seq298
Length=101239
Score = 96.9 bits (106), Expect = 3e-15
Identities = 456/711 (64%), Gaps = 29/711 (4%)
Strand=Plus/Plus
Query 131549 TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC--CAAATTGGGA- 131605
||||| || |||||||||| ||||| | | ||| | || ||| | | |||
Sbjct 55680 TCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA---ACAGTCGGCGAGGCCGGAG 55736
Query 131606 CATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAA 131665
|| ||| |||||||||| || | ||| | ||||||| || |||| |||||| || | |
Sbjct 55737 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 55796
Query 131666 TCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt 131725
|| || | ||| | ||| || ||||| | || ||| || | || | ||
Sbjct 55797 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCG-TGGTT 55855
Query 131726 tttttCAA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCAT 131784
|| || || | || || || | || || |||||||| || | || | || |
Sbjct 55856 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 55915
Query 131785 TGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCG 131841
|| || ||||| ||||||||| | |||| ||| | |||||||| | || ||
Sbjct 55916 GGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACG 55975
Query 131842 CAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGC 131901
|| ||| || | | |||||||| | |||| ||||||| | |||||| |||| |||
Sbjct 55976 CAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGA 56035
Query 131902 TCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATT 131960
| || || |||||||| || || ||||| ||| | || || || | |||||
Sbjct 56036 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCAT-CTTGGAAATCATGGCGCACG 56094
Query 131961 TGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAG 132020
| | || |||| ||||| ||||| | | |||| | || ||||| | ||||| |
Sbjct 56095 TCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACG 56154
Query 132021 AGGACAACTGTTGG---TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAA 132077
| |||| ||||| ||| |||||||| |||| ||||| ||| || || |
Sbjct 56155 AAGACA---GTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGA 56211
Query 132078 AAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACT---CGATATCGCCCAGAT 132134
| || || | | ||| | |||| | ||| || || || | || ||| |
Sbjct 56212 ACAGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAA- 56270
Query 132135 GTATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGA 132194
||| | ||||| ||||| ||||||||| | |||||| | ||||| ||||
Sbjct 56271 --ATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGA 56328
Query 132195 TTTTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243
| |||| | || ||| | ||||| || ||||| || || |||| |||
Sbjct 56329 TCTTGAGGAGGTACGACC--TCTCCAAGGTCTTGAAGCCGAAGTATTGGTA 56377
>seq1
Length=623116
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || | ||||| || || ||||| || || ||||| ||||| |||
Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | || || || ||||| |||||| | ||||||||||| || || || ||
Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| || || ||||| || | | | || | || || | | || ||
Sbjct 264832 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 264773
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | ||| || | ||||| |||||||| || || || || ||||||
Sbjct 264772 TCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCATA 264725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424924782804984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |