Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq298 179 5e-40
seq653 111 2e-19
>seq298
Length=101239
Score = 179 bits (198), Expect = 5e-40
Identities = 1139/1809 (63%), Gaps = 61/1809 (3%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| || ||||| || ||| |||||||| | | ||||| ||
Sbjct 54582 CGCAGGTAGTACATTCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTG 54641
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | ||| ||| || |||| | ||| | ||| || || |||||||||
Sbjct 54642 ATCTTGCCCATGGTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAG 54701
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| || || || ||||| | | || | || | || |||||||| |||
Sbjct 54702 GCGCCACGGTCGGCAGCCATCTGTACGACGG---TACGCTGGGAAATCTCCCACACCGTC 54758
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| | | ||| | || | ||||| | ||| ||||| ||||| ||| | |
Sbjct 54759 TTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCA 54818
Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133
| ||| | | |||||| | | ||||| || || |||| || |||| |
Sbjct 54819 GCAATGATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTT---G 54875
Query 118134 AGATGCTT---ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190
||| || |||||| || ||||| || ||||| ||| | | | ||||| |||
Sbjct 54876 AGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTG 54935
Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250
| ||||| || || |||||||| ||||| |||| || || | ||| || ||||||
Sbjct 54936 GAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGC 54995
Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310
||||| || | ||| || ||||| |||| || | | | | || | || || | || |
Sbjct 54996 ATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAG 55055
Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370
|||||||| || | | || | | |||||| || ||||||| || || | |
Sbjct 55056 TCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTG 55115
Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430
|| | || || || || | | || | ||| || ||| |||||| | | || |
Sbjct 55116 GAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGAC 55175
Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG-GCCTC 118489
|||||| ||||| || || || || || || || | | || | || ||
Sbjct 55176 ATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-GTCTCGAGCTTC 55234
Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549
| || || || | | || || || |||| || || || ||||| |||||
Sbjct 55235 AGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAG 55294
Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCT 118609
|| || |||||||| | ||| || || || || || || || || ||
Sbjct 55295 ACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGAC 55354
Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669
|| || | ||| || | || | |||||||| |||| || || | ||| | | |
Sbjct 55355 GTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAA 55414
Query 118670 ATCAAAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAG 118723
||| | ||| |||| ||| || | | || ||||| | || |||||
Sbjct 55415 GTCATAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAG 55468
Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783
|| || || | |||||| | | |||||| || ||||| ||||| | ||| ||
Sbjct 55469 GTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGA 55528
Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843
|| ||||| || | |||||| || || ||| ||| || |||||||| ||
Sbjct 55529 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAG 55588
Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902
|||| | || | ||||||||||| || | || || || || | ||| | | || |
Sbjct 55589 CATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGC 55648
Query 118903 CTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAA 118959
|| | ||| ||| | | ||||| ||||||||| ||| | || ||||
Sbjct 55649 CTTGA----TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAA 55704
Query 118960 ACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACC 119016
|||| || || || | || | ||| || || || | |||| || | ||||| ||
Sbjct 55705 ACTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAGTCC 55761
Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076
| | ||| || ||| || | |||||||||||| || |||||||| || || ||| |
Sbjct 55762 AGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAA 55821
Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136
|||| || || | || || | || || || || | || | || || | ||
Sbjct 55822 GATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGA 55881
Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAG 119190
||| |||||||| || || ||||| | |||| | || | | || |||
Sbjct 55882 CATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTTGTTACCGC 55938
Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250
| |||| ||||| | || ||| ||| || ||||| ||||| || | || ||| | ||
Sbjct 55939 CTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGG 55998
Query 119251 ATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCG-TGGATGTGCA 119307
| || || || ||| ||| || ||| | | ||| | || || |||| || |
Sbjct 55999 AGGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAAC-GAATGCGATGGACGTTGA 56055
Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367
||| || || || ||| ||| || || |||||| | |||| || ||||||| |
Sbjct 56056 GACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGC 56115
Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGT 119426
| ||||| ||||| |||| | ||| ||||||||| |||| ||| |||||| ||
Sbjct 56116 CTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGG 56174
Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484
|| || |||||||| ||||| || | || ||| ||||| | |||| |||||| ||
Sbjct 56175 GTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC--AGCTTGCTCGACATCAAGT 56232
Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544
||| ||||| | ||| || || || || ||| || | | ||| |||||||
Sbjct 56233 TGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAA 56292
Query 119545 ACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCA 119604
||||| ||| || | || | | ||||||| | | ||||||| | ||||||
Sbjct 56293 TCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCA 56352
Query 119605 AGGTCTTGA 119613
|||||||||
Sbjct 56353 AGGTCTTGA 56361
>seq653
Length=48578
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || || ||||| || |||||||||||||| |||||| ||| ||
Sbjct 5772 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 5831
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | ||| || || | ||| | || |||||||||||
Sbjct 5832 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGAT 5891
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173
||||| ||| ||||| || | ||||||| ||| ||
Sbjct 5892 GCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 5930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618420844572920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |