Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq298 197 2e-45 seq653 131 2e-25 seq160 102 1e-16 >seq298 Length=101239 Score = 197 bits (218), Expect = 2e-45 Identities = 977/1526 (64%), Gaps = 47/1526 (3%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || || | || ||| || || || |||| || | |||| Sbjct 56298 ACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGACAACGTTGAGCGCGTTATCGAGA 56239 Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346 | ||| || |||||| |||| | ||||| || || | || || || ||||| || Sbjct 56238 CGTACAACTTGATGTCGAGCAAGCT--GTTCACCCATGCCTCGCCCACTCTGTTCAACGC 56181 Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 || || || ||||| |||| |||||||| ||| | ||||||||||| || Sbjct 56180 CGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCCAT 56121 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTAT 104466 | | || ||||| | || || | | ||| || || || ||| |||||| || || Sbjct 56120 CGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCTGGAGGCAT 56061 Query 104467 TGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAAATGGT 104524 || | || ||||| | | ||| | ||| || ||| ||| || || || Sbjct 56060 CGGTCTCAACGTCCATCGCATTCGTTCCACTGG--CTCCTACATCGCGGGCACCAACGGA 56003 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 || | ||| | | || ||||| || || || ||| ||| || |||||||| | Sbjct 56002 ACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCGAC 55943 Query 104585 CAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCACGCG 104638 |||| || | ||| || || |||| |||| |||||||| |||||||| Sbjct 55942 CAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCC 55886 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGC 104698 ||| || | |||||||| || | || ||||| || | ||||||| || |||| Sbjct 55885 GATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGC 55826 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| ||| ||| || ||||| || |||||||||||||||||||| ||| ||| || Sbjct 55825 GATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGT 55766 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCGATGCCGT--GGGTGAG 104815 | ||| ||||| | ||||| || || || || || ||| |||| | || || ||| Sbjct 55765 GACTGGACTCTCATGTGTCCCAACGAGTGCTCC-GGCCTCGCCGA--CTGTTACGGCGAG 55709 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGC 104873 |||||||| || | ||| ||||||||| || ||| || | | || ||| | | Sbjct 55708 GAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAGACCAT-C 55652 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | || | ||||| | || || || || | || || ||||| || | || | | Sbjct 55651 AAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTC 55592 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| |||||| |||| ||||| || || ||||| | ||| ||| Sbjct 55591 ATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGC 55532 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || ||||| || || || |||||| | || | | | |||||| || || || Sbjct 55531 AGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGC 55472 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110 ||||| || || | || || |||| | || || | | | || ||| || | ||| | Sbjct 55471 AACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACCTATGACT 55414 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || | ||||| || || | |||| | ||| | ||||| | ||||| Sbjct 55413 TCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATCATTGACG 55354 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 || ||||| ||| || || ||||| || ||| | || || || || |||| Sbjct 55353 TCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCCATCGGTC 55294 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGAC 105289 |||| || ||||| || || |||| ||| || | || ||| | || || || | Sbjct 55293 TCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGAGTCTGCT 55235 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 ||||| || |||| | || || |||||||| || |||||||| || | Sbjct 55234 GAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT--CACCA 55177 Query 105350 AGTTCAG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 || | | ||||||| ||| || || | || | | || || || || | || Sbjct 55176 TGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCCCCTGTTT 55117 Query 105408 CACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 105466 | ||||||| | || || | || |||||||| | || || | || |||||| Sbjct 55116 C-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTGGGACTGG 55058 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || || | || || | |||||| || | || | || |||||||| ||| | || || Sbjct 55057 GACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGTTGCCCCC 54998 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||| || || ||| | || || |||| || || || ||||| ||||| ||||| Sbjct 54997 ATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACCTTACACC 54938 Query 105587 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCAT 105643 | |||||||| | | | | ||||| || ||||| | | ||||| | || | Sbjct 54937 TCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCCCTGGCTT 54878 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703 ||| | ||||| ||||| || || |||||| | | |||||| | | ||| | Sbjct 54877 CTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCGCATCATT 54821 Query 105704 AAAGCGGGTGGTTCCATTCAAAATAT 105729 | | ||| ||||||||||| || Sbjct 54820 GCTGAGAATGGCTCCATTCAAAACAT 54795 >seq653 Length=48578 Score = 131 bits (144), Expect = 2e-25 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 94790 |||||| || |||| ||||| || || ||||| | |||||| | | || ||||| Sbjct 5994 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 5935 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || | ||| |||| || |||| || || ||||||||| ||||||||||| || Sbjct 5934 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 5878 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | |||| |||| | || | ||||||||||||||| ||||||||||| || || ||||| Sbjct 5877 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 5819 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| || || |||||||| ||||| ||||| ||| || ||||| Sbjct 5818 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 5773 >seq160 Length=147577 Score = 102 bits (112), Expect = 1e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| |||||||||||||||| |||||| || || | |||||| | || || Sbjct 85504 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85445 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9820 || || || | || ||| ||||| || |||||||| || || | | | || || Sbjct 85444 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85385 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85384 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85327 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85326 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247261058680