Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq105 188 2e-42 seq1 149 2e-30 seq519 86.0 2e-11 >seq105 Length=180915 Score = 188 bits (208), Expect = 2e-42 Identities = 543/829 (66%), Gaps = 10/829 (1%) Strand=Plus/Minus Query 349493 ATTGAGGTTGAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 ||||||||||| | || || || |||| | | || ||||| || || || | | Sbjct 98904 ATTGAGGTTGAGTTCAAGGGCGAGAACAAGACC--TTCACTCCCGAGGAGATCTCCGCCA 98847 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 ||||| | || || ||| || | ||||| || || | |||| || ||| | | Sbjct 98846 TGGTTCTCGTCAAGATGCGCGAGACCGCTGAGGCCTACCTTGGTGGCCAGGTCACTAACG 98787 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| || ||||| || ||||| || || || |||||||| || || || ||||| | Sbjct 98786 CTGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCCG 98727 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||||| || | || || || | || || || || ||||| || || || |||| Sbjct 98726 GTCTCATTGCCGGTCTGAACGTCCTTCGTATCATCAACGAGCCCACCGCCGCTGCCATTG 98667 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || ||||| || | | ||| || || |||| ||||| || | |||| Sbjct 98666 CCTACGGTCTTGACAAGAAGGCTGAGGGTGAGCGCAACGTTCTGATTTTCGACCTTGGTG 98607 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 ||||||| || ||||| || || || || |||| ||||| || || || || || | | Sbjct 98606 GTGGTACCTTCGATGTTTCCCTCCTGACGATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 98547 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || || | ||||| || || || || || || ||||| || || | Sbjct 98546 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCG 98487 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 | || || || ||||| ||||| || | || | || || | || ||||| Sbjct 98486 TCAACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCTCGTGCTCTGCGT 98428 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCT 350029 ||||| | ||||| || || ||||| ||||| || | || || || |||| ||||| Sbjct 98427 CGCCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 98368 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| ||||| ||||| || || | || |||| | || || || |||||||| Sbjct 98367 ATTGAGATTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGC 98308 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | || ||| || || | | || || | || || || || | Sbjct 98307 TTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTTCTT 98248 Query 350150 AAAGATGCAAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || | || | || | ||| || | || | || | || |||||||| | Sbjct 98247 ACTGATGCCAAGA--TCGATAAGTCCCAGGTTCACGAGATCGTCCTGGTCGGTGGTTCCA 98190 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | ||||| || | || || | | || || | || || ||||| || || | Sbjct 98189 CCCGTATCCCCCGCATCCAGAAGCTCATTTCCGACTACTTCAACGGCAAGGAGCCCAACA 98130 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || || || ||||| |||||||| || ||||| ||||||||||| Sbjct 98129 AGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGC 98081 >seq1 Length=623116 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || | ||||||||| || ||||| || | Sbjct 264960 TTTGCATACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGT 264901 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| |||||||||||||| || ||||| ||||| ||||| | Sbjct 264900 AATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGT 264841 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | || || || || || | ||| || | Sbjct 264840 CAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAG 264781 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||| ||||| ||||| || || || || ||||||||||| Sbjct 264780 ACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726 Score = 118 bits (130), Expect = 3e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| || || || || ||||| || Sbjct 265181 ACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGA 265122 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || | || || ||||| ||||| ||||||||||| |||||||| Sbjct 265121 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGG 265062 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688 ||| || || || ||||| || || ||| || ||||| || || | || || | || | Sbjct 265061 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCTGAAGACTCGA 265003 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || | ||||| ||||| | || || || ||||| ||||| Sbjct 265002 CTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 264954 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| || || ||||| || || || || Sbjct 264728 CATACCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 264669 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| ||||| || || ||||| || || || || ||||| || || Sbjct 264668 GCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGG 264609 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | ||| || | || Sbjct 264608 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTC 264549 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||||||||| Sbjct 264548 AACCTCGAGAGTGATGGTCTTTCCGGT 264522 >seq519 Length=63205 Score = 86.0 bits (94), Expect = 2e-11 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 423772 ATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTG-GCGAAAGC-CTCGTGGGTT 423829 ||| ||||||||||||||| | |||||||||| |||| || |||||||| | |||||||| Sbjct 47932 ATGGCCGAGTGGTCTAAGGCGACAGACTTAAGTTCTGTTGTGCGAAAGCACGCGTGGGTT 47873 Query 423830 CAAACCCCACT 423840 ||||||||||| Sbjct 47872 CAAACCCCACT 47862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515218347836171