Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq298 271 8e-68 seq653 141 1e-28 seq362 96.9 4e-15 >seq298 Length=101239 Score = 271 bits (300), Expect = 8e-68 Identities = 491/713 (69%), Gaps = 24/713 (3%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||||||| |||| ||| ||| ||| || || || ||| |||| || |||||| Sbjct 56242 GAGACGTACAACTTGATGTCGAGC---AAGCTGTTCACCCATGCCTCGCCCACTCTGTTC 56186 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| | || |||| |||||||| || | |||||||| ||| Sbjct 56185 AACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGAC 56126 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || ||||| ||||||||||| || |||||| ||| ||| || |||||| | | || Sbjct 56125 TCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCTGGA 56066 Query 53420 GGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 || |||||| || || | ||| | | ||| | | ||| | ||| ||| || | Sbjct 56065 GGCATCGGTCTCAACGTCCATCGCA--TTCGTTCCACTGGCTCCTACATCGCGGGCACCA 56008 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| | || | || |||| |||||||| || |||||||||||||| || || || | Sbjct 56007 ACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATG 55948 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||| || ||| ||||| || | |||||||||||||| ||||| ||||||| Sbjct 55947 TCGACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACG 55888 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | ||||| ||||| || || ||| || || | || ||| | || || Sbjct 55887 CCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCC 55828 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 | || || || || || ||||| || || ||||||||| | | || |||||| ||| Sbjct 55827 GCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACG 55768 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| || ||||| || ||||||||| |||||||| | | ||| ||||| ||| Sbjct 55767 GTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGACTGT-TACGGCGAG 55709 Query 53777 GAGTTTAACGAGATGTATCGGACGTA------CGCAGTTCAGGGCCGCTACAAGAAGAAG 53830 |||||| | | | |||| || ||| || | | |||| ||| |||| Sbjct 55708 GAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGGGTCGC------AAGACC 55655 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 ||||||| | || | ||| | || ||||| || ||| ||||||||| | || Sbjct 55654 ATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCC 55595 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | |||| |||||||| | | |||| |||||||||||||||||| |||| Sbjct 55594 TTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 55542 Score = 104 bits (114), Expect = 3e-17 Identities = 614/968 (63%), Gaps = 48/968 (5%) Strand=Plus/Minus Query 54977 TGCACTGAAATCGTCGAGGTTTCCGAGGCGGACGAGACGGCTGTATGCAATTTGGCATCT 55036 |||||||||||| ||||| || | | | || ||| || || ||||| |||| ||| Sbjct 55519 TGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCT 55460 Query 55037 CTGTGCCTGCCGACGTTTCTGAAGTCCTTGAATCCTAATGGTGGCCATCCATTCTTATTT 55096 ||| |||||| || || | |||| | | || | ||| | ||| Sbjct 55459 CTGGCCCTGCCCACCTT--------CGTTGACTAC-AACGAAGGCA-------CCTAT-- 55418 Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||| | ||||| || || | ||||| || ||| ||||| || |||| Sbjct 55417 GACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATCATT 55358 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||| | | | ||| || || |||| | || || || |||||| Sbjct 55357 GACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCCATC 55298 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | |||| || |||||| | || || ||| | || | |||||||||| || Sbjct 55297 GGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTGCGCATGCCCTTCGAGTCT 55238 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335 | |||||||| | ||| || | |||||| || | ||||||| || || ||| Sbjct 55237 GCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCCGCCCTCAC 55179 Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395 ||| || || |||| | || || |||||| ||| | | || || | Sbjct 55178 CATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCCCCTGT 55119 Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGGGGC---AAG---TCTGACCCCATG---TT 55446 | |||||| ||||||||| ||| | |||| | ||| ||||||| | | | Sbjct 55118 TTCCAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTGGGACTG 55059 Query 55447 TGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 ||| ||||| | | || | | ||| | |||||| |||||||| || || Sbjct 55058 GGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGTTGCCCC 54999 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || || | ||||| |||||||||||||| ||||| || ||||| Sbjct 54998 CATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACCTTACAC 54939 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCAC-- 55624 |||||||||||| |||||| || || || ||||| || | || ||| | | Sbjct 54938 CTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTC--CAGG-TCGTCAATCCCTG 54882 Query 55625 -CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-ATCAAGA--CGGAT-A 55679 || |||||||||| |||| |||| || | | || |||| || || | Sbjct 54881 GCTTCTCAAGGACCTTGTCGAGATGGGACTGTGGT-CCGACGGCATGAAGAACCGCATCA 54823 Query 55680 TTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGAG 55735 ||| ||| || ||| | || || | | || ||| | | | |||||| Sbjct 54822 TTGCTGAGAATGGC---TCCATTCAAAACATCCCCAACATCCCTGCCGAGG-TCAAGGCC 54767 Query 55736 ATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGT 55795 | ||| |||||||||||||||| | ||| | | | | ||| ||| || ||| Sbjct 54766 TTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACCGTCGTACAGATGGCTGCCGACCGT 54707 Query 55796 GGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCC 55855 || || | |||||||||||| || || || ||||| |||| | |||| | ||| | Sbjct 54706 GGCGCCTTCATCGACCAGTCTCAATCCCTCAACATTCACATGAAAGATCCGACCATGGGC 54647 Query 55856 AAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTAT 55915 ||| | | | |||||||| || |||||| ||| || ||||| || |||||||| Sbjct 54646 AAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTGGGTCTGAAGACTGGAATGTACTAC 54587 Query 55916 CTGCGGAC 55923 ||||| || Sbjct 54586 CTGCGTAC 54579 >seq653 Length=48578 Score = 141 bits (156), Expect = 1e-28 Identities = 312/457 (68%), Gaps = 22/457 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||| |||| ||||| ||||| ||||||||||| || | | |||||||||||||| Sbjct 5485 TAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 5544 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579 |||| || || || ||| ||| | ||| || | | || ||| || Sbjct 5545 AAGTCAAAGGGATTGCTTGACTTGTAGAC---CTTTTCATTGCCGAGGGTAACCAGCAGA 5601 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || |||||||||| |||||||||| |||| | || ||| |||| ||| | Sbjct 5602 CGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCG 5661 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || ||||| |||||||||| ||||| ||| | || | || | |||||| || Sbjct 5662 CAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCG---TCGACAATGATG 5718 Query 74700 T---GAATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | ||| | | || |||| | | ||||||| ||||| ||| | || ||| Sbjct 5719 TCCCGGATGACCTGCTTGCTGGGGCGGTGCT---TCAGGTGGGAGTAGAGCAGGCA-GGC 5774 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| ||||| || | || | |||||| || || | |||||||| Sbjct 5775 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 5834 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGC 74871 ||| || ||||||||||| | ||||||||||| | || |||| ||| ||||||||||| Sbjct 5835 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGC 5893 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 | || ||| || ||||||||||| || || ||||| Sbjct 5894 CCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 5930 >seq362 Length=87589 Score = 96.9 bits (106), Expect = 4e-15 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || |||||||| |||||| |||||||| | |||||| | ||||| Sbjct 28337 AATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACT 28278 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 || || | | ||| | |||||||| || ||||| || || || | || || || Sbjct 28277 GGGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGT 28218 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || ||| | ||||| ||||| || | || ||||| | || || || |||| Sbjct 28217 CTGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAA 28158 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 | | |||||| || |||| || |||||| ||| || || || ||||| || Sbjct 28157 TTCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACG 28098 Query 117550 CTGACTTGGCTTCAGACCATC 117570 ||||| |||||| || || || Sbjct 28097 CTGACCTGGCTTGAGGCCGTC 28077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | ||||| ||||| |||||| || || || | || || | ||| | Sbjct 28336 ATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACTG 28277 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 || |||||| ||||| |||||||| || || |||||||| || | | | || || Sbjct 28276 GGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGTC 28217 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 |||||| ||||||||||||| || | || ||||| | | || || ||||| Sbjct 28216 TGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAAT 28157 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | |||||| ||| | |||| || |||||| || ||||| || ||||| ||| Sbjct 28156 TCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACGC 28097 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || ||| || | ||||| | ||| ||||| || ||| || |||| Sbjct 28096 TGACCTGGCTTGAGGCCGTCAATCACAGATGGAATAGATCGCATGTTGTC 28047 Score = 82.4 bits (90), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACG 119125 |||| | |||||| |||||| |||||||||||||| ||||| ||||| ||| ||| Sbjct 26458 AATTGCTCACTGAAAACGTTGCAAAGCTTGGCACCGTAACCGTTACGACCGCCG---ACG 26402 Query 119126 CGC---TGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182 | | ||| ||||||| ||||||||| | ||| | | ||| |||||||| | ||| Sbjct 26401 GTCTTTTTCTCGTCGTCGTCGTAGTTGGAACCGGTAAGCAAGTGACCAAAGATCATCTCC 26342 Query 119183 GGGAT 119187 ||||| Sbjct 26341 GGGAT 26337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203297748600