Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq298 271 8e-68
seq653 141 1e-28
seq362 96.9 4e-15
>seq298
Length=101239
Score = 271 bits (300), Expect = 8e-68
Identities = 491/713 (69%), Gaps = 24/713 (3%)
Strand=Plus/Minus
Query 53243 GAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||||||| |||| ||| ||| ||| || || || ||| |||| || ||||||
Sbjct 56242 GAGACGTACAACTTGATGTCGAGC---AAGCTGTTCACCCATGCCTCGCCCACTCTGTTC 56186
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| | || |||| |||||||| || | |||||||| |||
Sbjct 56185 AACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGAC 56126
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| ||||| ||||||||||| || |||||| ||| ||| || |||||| | | ||
Sbjct 56125 TCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCTGGA 56066
Query 53420 GGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
|| |||||| || || | ||| | | ||| | | ||| | ||| ||| || |
Sbjct 56065 GGCATCGGTCTCAACGTCCATCGCA--TTCGTTCCACTGGCTCCTACATCGCGGGCACCA 56008
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
|||| | || | || |||| |||||||| || |||||||||||||| || || || |
Sbjct 56007 ACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATG 55948
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
|| |||| || ||| ||||| || | |||||||||||||| ||||| |||||||
Sbjct 55947 TCGACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACG 55888
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
|||| | | ||||| ||||| || || ||| || || | || ||| | || ||
Sbjct 55887 CCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCC 55828
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717
| || || || || || ||||| || || ||||||||| | | || |||||| |||
Sbjct 55827 GCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACG 55768
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776
|| ||| || ||||| || ||||||||| |||||||| | | ||| ||||| |||
Sbjct 55767 GTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGACTGT-TACGGCGAG 55709
Query 53777 GAGTTTAACGAGATGTATCGGACGTA------CGCAGTTCAGGGCCGCTACAAGAAGAAG 53830
|||||| | | | |||| || ||| || | | |||| ||| ||||
Sbjct 55708 GAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGGGTCGC------AAGACC 55655
Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890
||||||| | || | ||| | || ||||| || ||| ||||||||| | ||
Sbjct 55654 ATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCC 55595
Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| |||| |||||||| | | |||| |||||||||||||||||| ||||
Sbjct 55594 TTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 55542
Score = 104 bits (114), Expect = 3e-17
Identities = 614/968 (63%), Gaps = 48/968 (5%)
Strand=Plus/Minus
Query 54977 TGCACTGAAATCGTCGAGGTTTCCGAGGCGGACGAGACGGCTGTATGCAATTTGGCATCT 55036
|||||||||||| ||||| || | | | || ||| || || ||||| |||| |||
Sbjct 55519 TGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCT 55460
Query 55037 CTGTGCCTGCCGACGTTTCTGAAGTCCTTGAATCCTAATGGTGGCCATCCATTCTTATTT 55096
||| |||||| || || | |||| | | || | ||| | |||
Sbjct 55459 CTGGCCCTGCCCACCTT--------CGTTGACTAC-AACGAAGGCA-------CCTAT-- 55418
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||| | ||||| || || | ||||| || ||| ||||| || ||||
Sbjct 55417 GACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATCATT 55358
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
||| || ||||||| | | | ||| || || |||| | || || || ||||||
Sbjct 55357 GACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCCATC 55298
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| |||| || |||||| | || || ||| | || | |||||||||| ||
Sbjct 55297 GGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTGCGCATGCCCTTCGAGTCT 55238
Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335
| |||||||| | ||| || | |||||| || | ||||||| || || |||
Sbjct 55237 GCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCCGCCCTCAC 55179
Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395
||| || || |||| | || || |||||| ||| | | || || |
Sbjct 55178 CATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCCCCTGT 55119
Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGGGGC---AAG---TCTGACCCCATG---TT 55446
| |||||| ||||||||| ||| | |||| | ||| ||||||| | | |
Sbjct 55118 TTCCAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTGGGACTG 55059
Query 55447 TGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506
||| ||||| | | || | | ||| | |||||| |||||||| || ||
Sbjct 55058 GGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGTTGCCCC 54999
Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566
||||| || || || | ||||| |||||||||||||| ||||| || |||||
Sbjct 54998 CATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACCTTACAC 54939
Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCAC-- 55624
|||||||||||| |||||| || || || ||||| || | || ||| | |
Sbjct 54938 CTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTC--CAGG-TCGTCAATCCCTG 54882
Query 55625 -CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-ATCAAGA--CGGAT-A 55679
|| |||||||||| |||| |||| || | | || |||| || || |
Sbjct 54881 GCTTCTCAAGGACCTTGTCGAGATGGGACTGTGGT-CCGACGGCATGAAGAACCGCATCA 54823
Query 55680 TTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGAG 55735
||| ||| || ||| | || || | | || ||| | | | ||||||
Sbjct 54822 TTGCTGAGAATGGC---TCCATTCAAAACATCCCCAACATCCCTGCCGAGG-TCAAGGCC 54767
Query 55736 ATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGT 55795
| ||| |||||||||||||||| | ||| | | | | ||| ||| || |||
Sbjct 54766 TTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACCGTCGTACAGATGGCTGCCGACCGT 54707
Query 55796 GGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCC 55855
|| || | |||||||||||| || || || ||||| |||| | |||| | ||| |
Sbjct 54706 GGCGCCTTCATCGACCAGTCTCAATCCCTCAACATTCACATGAAAGATCCGACCATGGGC 54647
Query 55856 AAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTAT 55915
||| | | | |||||||| || |||||| ||| || ||||| || ||||||||
Sbjct 54646 AAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTGGGTCTGAAGACTGGAATGTACTAC 54587
Query 55916 CTGCGGAC 55923
||||| ||
Sbjct 54586 CTGCGTAC 54579
>seq653
Length=48578
Score = 141 bits (156), Expect = 1e-28
Identities = 312/457 (68%), Gaps = 22/457 (5%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||| |||| ||||| ||||| ||||||||||| || | | ||||||||||||||
Sbjct 5485 TAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 5544
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579
|||| || || || ||| ||| | ||| || | | || ||| ||
Sbjct 5545 AAGTCAAAGGGATTGCTTGACTTGTAGAC---CTTTTCATTGCCGAGGGTAACCAGCAGA 5601
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || |||||||||| |||||||||| |||| | || ||| |||| ||| |
Sbjct 5602 CGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCG 5661
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699
|| ||||| |||||||||| ||||| ||| | || | || | |||||| ||
Sbjct 5662 CAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCG---TCGACAATGATG 5718
Query 74700 T---GAATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752
| | ||| | | || |||| | | ||||||| ||||| ||| | || |||
Sbjct 5719 TCCCGGATGACCTGCTTGCTGGGGCGGTGCT---TCAGGTGGGAGTAGAGCAGGCA-GGC 5774
Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812
||| || ||| ||||| || | || | |||||| || || | ||||||||
Sbjct 5775 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 5834
Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGC 74871
||| || ||||||||||| | ||||||||||| | || |||| ||| |||||||||||
Sbjct 5835 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGC 5893
Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
| || ||| || ||||||||||| || || |||||
Sbjct 5894 CCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 5930
>seq362
Length=87589
Score = 96.9 bits (106), Expect = 4e-15
Identities = 178/261 (68%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || |||||||| |||||| |||||||| | |||||| | |||||
Sbjct 28337 AATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACT 28278
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
|| || | | ||| | |||||||| || ||||| || || || | || || ||
Sbjct 28277 GGGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGT 28218
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
|| ||| | ||||| ||||| || | || ||||| | || || || ||||
Sbjct 28217 CTGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAA 28158
Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549
| | |||||| || |||| || |||||| ||| || || || ||||| ||
Sbjct 28157 TTCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACG 28098
Query 117550 CTGACTTGGCTTCAGACCATC 117570
||||| |||||| || || ||
Sbjct 28097 CTGACCTGGCTTGAGGCCGTC 28077
Score = 95.1 bits (104), Expect = 1e-14
Identities = 195/290 (67%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | ||||| ||||| |||||| || || || | || || | ||| |
Sbjct 28336 ATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACTG 28277
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
|| |||||| ||||| |||||||| || || |||||||| || | | | || ||
Sbjct 28276 GGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGTC 28217
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
|||||| ||||||||||||| || | || ||||| | | || || |||||
Sbjct 28216 TGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAAT 28157
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| |||||| ||| | |||| || |||||| || ||||| || ||||| |||
Sbjct 28156 TCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACGC 28097
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
|| ||| || | ||||| | ||| ||||| || ||| || ||||
Sbjct 28096 TGACCTGGCTTGAGGCCGTCAATCACAGATGGAATAGATCGCATGTTGTC 28047
Score = 82.4 bits (90), Expect = 8e-11
Identities = 94/125 (75%), Gaps = 6/125 (5%)
Strand=Plus/Minus
Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACG 119125
|||| | |||||| |||||| |||||||||||||| ||||| ||||| ||| |||
Sbjct 26458 AATTGCTCACTGAAAACGTTGCAAAGCTTGGCACCGTAACCGTTACGACCGCCG---ACG 26402
Query 119126 CGC---TGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182
| | ||| ||||||| ||||||||| | ||| | | ||| |||||||| | |||
Sbjct 26401 GTCTTTTTCTCGTCGTCGTCGTAGTTGGAACCGGTAAGCAAGTGACCAAAGATCATCTCC 26342
Query 119183 GGGAT 119187
|||||
Sbjct 26341 GGGAT 26337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547203297748600
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