Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq298 306 4e-78 seq1 181 1e-40 seq137 149 7e-31 seq126 118 1e-21 seq362 113 5e-20 >seq298 Length=101239 Score = 306 bits (338), Expect = 4e-78 Identities = 972/1495 (65%), Gaps = 73/1495 (5%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || ||||| ||| ||| | || | ||| | |||||||| || || |||| Sbjct 54900 AACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCG 54959 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | ||||| || || ||||| ||| | || | ||| || Sbjct 54960 TTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTG 55019 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAA---TCTGA---CCAAAAATCAACCCCA 80529 || | |||||||| |||||| | ||| |||| || | ||| | ||| | Sbjct 55020 CGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAG----A 55075 Query 80530 ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 ||| |||| |||||||||||| ||| | || |||| || | || || || || Sbjct 55076 GGGCT-TGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGT 55134 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGAT 80647 ||| ||| | ||| || || |||| || || ||| | ||||| ||||| | Sbjct 55135 ACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGT 55194 Query 80648 AAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGC 80707 | ||| ||| |||| |||||| | | || || | | ||||| | || || Sbjct 55195 AGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCATGC 55254 Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 || | |||| | ||||| |||||||| ||||||| |||| ||||| |||||| Sbjct 55255 GCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCA 55314 Query 80768 TGTTCGATCGCTCGG-CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGG 80826 |||| | | ||| ||||| ||| ||||| ||| || |||| | ||||| | Sbjct 55315 TGTT-GCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAG 55373 Query 80827 TTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCC--CCT 80884 ||||| |||||| | || || || || | ||||| ||||| || ||| || | | Sbjct 55374 TTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTC--ATAGGTGCCTTCGT 55431 Query 80885 TC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG 80938 | || || | || ||| ||| || ||||| ||||| ||||| ||||| |||| Sbjct 55432 TGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAG 55491 Query 80939 CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTT 80998 | | |||||| |||||| ||||| | || || || ||||| ||||| | Sbjct 55492 GCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCT 55551 Query 80999 TCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGA 81058 ||||||| |||| |||| ||||||||||| |||| | ||| | || ||||| Sbjct 55552 TCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 55611 Query 81059 CCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGC 81118 ||| | || |||||||||| ||| | || | ||||||| |||||| || | Sbjct 55612 TCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTAC 55671 Query 81119 CTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 | ||| | | ||||| |||| | || |||| | |||| | || | |||| Sbjct 55672 CCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGC 55731 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | | ||||||||| || ||||| || |||||| || ||||| || |||||||| Sbjct 55732 CGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGA 55791 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||||||||||| |||||| ||| || |||||| || ||||||| | || | Sbjct 55792 AGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGT 55851 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| ||| | ||||| || || | || || || ||||| ||||| || || | || Sbjct 55852 GGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGG 55911 Query 81359 CGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 ||| | || | |||| | || || |||| ||| || || || || ||| | Sbjct 55912 CGAAGGCACCAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGA 55968 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||||| |||||||| || ||| | || ||||| || ||| |||| || | Sbjct 55969 AGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGC 56028 Query 81473 CCTTGGCGCGCACCTTGCTGATTGA----AAGACCGATGCCACCTGACCACTTTGAAATC 81528 | ||| || | ||| ||| || ||||||||||| || | | ||| |||||| Sbjct 56029 CAGTGGAACGAA---TGC-GATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATC 56084 Query 81529 TGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC---- 81584 || ||| || | ||| || || || || |||||| || | ||||| || Sbjct 56085 ATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACG 56144 Query 81585 ---AAGCAAGAA-ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTG 81640 ||||| ||| |||| | | | ||||||| | |||||| |||||||| || | Sbjct 56145 AGGAAGCACGAAGACAGTTGGGC--CTGAGGG------GTGCCGGCGTTGAACAGAGTGG 56196 Query 81641 GGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAA 81700 | | || || |||| | | ||||||| || || || || | ||||| || Sbjct 56197 GCGAGGCATGGGTGAACAGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAA 56256 Query 81701 TATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG---- 81756 | |||||| ||| || | ||| |||||||||| ||||| || ||| ||||| Sbjct 56257 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 56316 Query 81757 -CCTGCGTTC----------AGGTACATCTTCTGCAAAGTCTTGATGCCGAAGTA 81800 | ||| || |||||| | ||| ||| ||||||| ||||||||| Sbjct 56317 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTA 56371 >seq1 Length=623116 Score = 181 bits (200), Expect = 1e-40 Identities = 164/204 (80%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || ||||| ||||||||||| |||| ||| | ||| | ||| | Sbjct 264522 ACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGTCC 264581 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 264582 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 264641 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| ||| ||||| ||| ||||| || ||||||||||||||||||| || Sbjct 264642 CAGCTTGAGGATGGTCGCACCCTCAGC-GACTACAACATCCAAAAGGAATCCACTCTCCA 264700 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 264701 CCTCGTCCTTCGTCTGCGTGGTGG 264724 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||||||||| || ||| | || || ||||| Sbjct 264954 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 265013 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || |||||||||||||| |||||||| |||||| Sbjct 265014 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 265073 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| | ||||||| |||||||||| | || || || Sbjct 265074 CAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAAC 265133 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | ||||| || ||||| || Sbjct 265134 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGTGGTGGTCA 265183 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| |||||| | ||||| ||||| Sbjct 264726 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCG 264785 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 264786 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 264845 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || || ||||| ||||||| ||| || || | || || || Sbjct 264846 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAAC 264905 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||| | || | || | || || ||||| || Sbjct 264906 ATTCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGCCTCCGCGGAGG 264952 >seq137 Length=159453 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || || |||||||| || |||||||| ||||| Sbjct 53137 ATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 53196 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 53197 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 53256 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || || || ||||| || ||||| | || ||||| | ||||| Sbjct 53257 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTAC 53316 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || || |||| || || ||||| Sbjct 53317 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 53366 >seq126 Length=166795 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || || ||||| ||||| || ||||||||||| || | || Sbjct 82414 CTTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGAT 82473 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 82474 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 82533 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||||||||| || ||||| | || ||||| | ||||| || |||| || Sbjct 82534 GATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 82593 Query 27594 GGAAT 27598 || || Sbjct 82594 GGTAT 82598 >seq362 Length=87589 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| || |||||| ||| |||||||||||||| ||||| ||||| || || Sbjct 28052 CATGCGATCTATTCCATCTGTGATTGACGGCCTCAAGCCAGGTCAGCGTAAGGTCATGTA 28111 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 ||| ||| |||||| || || | | || |||||| | || | || || || Sbjct 28112 CGCTTGCTTCAAGAGAAATTTGACCAAGGATCAGAAGGTCATTGAATTGGCTGGTTATGT 28171 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | |||||||| |||| |||||||| || | || || ||| ||||| || || Sbjct 28172 TTCCGAGCAAACATCCTACCACCACGGTGAAGTTTCCCTGCAGCAGACCATCATCGGTCT 28231 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||| ||||||||| | || ||| | |||| ||||| || ||| | || || Sbjct 28232 CGCACAGAATTTTGTCGGTTCCAACAACATCAACTGCCTCGAACCCAGTGGTAACTTCGG 28291 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 |||| || ||||||||| |||||||| || | |||||||| Sbjct 28292 TTCCCGTCTTGCCGGTGGCTCTGATGCTGCCAGTCCTCGTTACAT 28336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297161669840