Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq147 122 8e-23
>seq147
Length=155241
Score = 122 bits (134), Expect = 8e-23
Identities = 194/274 (71%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385
||||||||||||| |||| || || || ||||| |||| ||| |||||| | |
Sbjct 45280 AAGATCTGGGACGGAAACGGCTCGCGCGAGTTTCTCGACAGTGTCGGCCTTTCCCACCGC 45339
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
| | | ||||| | ||||| || ||||| ||||| ||| | |||||||| || ||||
Sbjct 45340 G--AAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGCACTTTGGCGCCGAGT 45397
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504
| || | || ||| |||||||| |||| ||||| | ||||| ||| | || |||
Sbjct 45398 A-CGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTTGACCAACTGGCCGAGGTCATC 45456
Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564
| | | ||| |||||| | ||| | ||||| || || ||||||||||||| |
Sbjct 45457 CAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGCGCGTGGAACCCCGCG 45516
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
|| || |||||||||||| ||||||||||
Sbjct 45517 GACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 45550
Score = 122 bits (134), Expect = 8e-23
Identities = 194/274 (71%), Gaps = 6/274 (2%)
Strand=Plus/Minus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||||||||| |||||||||||| || ||| ||||||||||||| || || ||
Sbjct 45550 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTCAGCAGGA 45491
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
||| | ||| | |||||| ||| | | | ||| || | ||| ||||| | |
Sbjct 45490 TCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGGATGACCTCGGCCAGTTGGTCAACGC 45431
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| |||||||| ||| || | || ||||| || |||||||| | ||| |||
Sbjct 45430 CCTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCGGCGCCAAAGTGCCGCCATTGG 45372
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG--CTTGTCCA 6983
|| ||||| || ||||| | ||||| | | || | |||||| ||| |||| |
Sbjct 45371 AAGCCGTACACGGGGCCGAGATCGCCGACTT--CGCGGTGGGAAAGGCCGACACTGTCGA 45314
Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|||| || || || |||| |||||||||||||
Sbjct 45313 GAAACTCGCGCGAGCCGTTTCCGTCCCAGATCTT 45280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448251994709040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |