Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq147 122 8e-23 >seq147 Length=155241 Score = 122 bits (134), Expect = 8e-23 Identities = 194/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385 ||||||||||||| |||| || || || ||||| |||| ||| |||||| | | Sbjct 45280 AAGATCTGGGACGGAAACGGCTCGCGCGAGTTTCTCGACAGTGTCGGCCTTTCCCACCGC 45339 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | | | ||||| | ||||| || ||||| ||||| ||| | |||||||| || |||| Sbjct 45340 G--AAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGCACTTTGGCGCCGAGT 45397 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 | || | || ||| |||||||| |||| ||||| | ||||| ||| | || ||| Sbjct 45398 A-CGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTTGACCAACTGGCCGAGGTCATC 45456 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 | | | ||| |||||| | ||| | ||||| || || ||||||||||||| | Sbjct 45457 CAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGCGCGTGGAACCCCGCG 45516 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 || || |||||||||||| |||||||||| Sbjct 45517 GACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 45550 Score = 122 bits (134), Expect = 8e-23 Identities = 194/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| |||||||||||| || ||| ||||||||||||| || || || Sbjct 45550 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTCAGCAGGA 45491 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 ||| | ||| | |||||| ||| | | | ||| || | ||| ||||| | | Sbjct 45490 TCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGGATGACCTCGGCCAGTTGGTCAACGC 45431 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| |||||||| ||| || | || ||||| || |||||||| | ||| ||| Sbjct 45430 CCTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCGGCGCCAAAGTGCCGCCATTGG 45372 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG--CTTGTCCA 6983 || ||||| || ||||| | ||||| | | || | |||||| ||| |||| | Sbjct 45371 AAGCCGTACACGGGGCCGAGATCGCCGACTT--CGCGGTGGGAAAGGCCGACACTGTCGA 45314 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 |||| || || || |||| ||||||||||||| Sbjct 45313 GAAACTCGCGCGAGCCGTTTCCGTCCCAGATCTT 45280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251994709040