Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq298 118 1e-21
>seq298
Length=101239
Score = 118 bits (130), Expect = 1e-21
Identities = 315/479 (66%), Gaps = 2/479 (0%)
Strand=Plus/Plus
Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019
||| || || || ||||| | | ||||||||| | | || |||| ||||| |||||
Sbjct 55736 GCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAG 55795
Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079
|||||| ||||| || || | || ||||| |||| | || || || || ||
Sbjct 55796 ATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTT 55855
Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139
||| ||||||||| ||||| | | ||| | ||||| || || || || || || |
Sbjct 55856 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 55915
Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199
| |||||||| || ||||| || || || | ||| | |||||||| || | || |
Sbjct 55916 GGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACG 55975
Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259
|| ||| || | | |||||| || ||||| || || || | || || ||| | |
Sbjct 55976 CAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGA 56035
Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319
||||| | | | | || || ||||| |||||||| || || | |||| |||
Sbjct 56036 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGC-ACG 56094
Query 78320 T-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGC 78378
| || | || |||||||| || || || ||| ||| |||| | | || || ||
Sbjct 56095 TCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACG 56154
Query 78379 TAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437
||||| ||| ||| || || || || || | || || || ||||| || |||
Sbjct 56155 AAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 56213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694652675000480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |