Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq653 105 1e-17 seq298 100 4e-16 >seq653 Length=48578 Score = 105 bits (116), Expect = 1e-17 Identities = 291/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || | ||||| ||||| || || || || ||||| | | || || || Sbjct 5479 TTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 5538 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 |||||||| ||||| ||||| | || || | |||| | || | | | Sbjct 5539 TCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGC 5598 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | || || || ||||| || ||| ||||| | | ||||||| || | ||| Sbjct 5599 AGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGA 5658 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || |||||||| || || ||||| || ||||| |||| || || || | | Sbjct 5659 CCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTC-GACAAT--- 5714 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGA----TGCATCAAATGTTTAAACATTAAACATGC 46634 ||||| | | | | |||| ||| ||| ||| || | | | || || Sbjct 5715 GATGTCCCGGATGACCTGCTTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGC 5774 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||||| || || ||||| || | | || | ||| || || || || || ||||| Sbjct 5775 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 5834 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || |||||||| ||||||||||| || | ||| || | || || ||||| ||||| Sbjct 5835 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATGCC 5894 Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778 || ||||| ||||| |||||||| Sbjct 5895 CTCAACAGCAGCGAAGGCGACAAG 5918 >seq298 Length=101239 Score = 100 bits (110), Expect = 4e-16 Identities = 431/678 (64%), Gaps = 14/678 (2%) Strand=Plus/Plus Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615 || || || |||||||| | | ||| ||||| | | || || | ||||| |||||| Sbjct 55737 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 55796 Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 ||||| ||||| || || | || ||||| |||| | || || || || ||| Sbjct 55797 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 55856 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || |||||| |||||||| | | ||| | ||||| || || || || || || | Sbjct 55857 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 55916 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||| ||||| || ||||| || || || | ||| | || ||||| || | || | | Sbjct 55917 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 55976 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| || | | ||||| || || || || || || | || || ||| | | Sbjct 55977 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 56036 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 ||||| | | || || || ||||| ||||| || || || | || || ||| Sbjct 56037 CGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGT 56095 Query 76916 -TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || | ||||| |||||||| || || || ||| |||| | | || || || Sbjct 56096 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 56155 Query 76975 AGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 ||||| ||| ||| || || || || |||| || || || ||||| |||||| Sbjct 56156 AGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG 56215 Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT-----TCTATATCCCATTGATG 77088 || || | | ||||| || || ||||| ||| | | |||| Sbjct 56216 CTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------ 56269 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148 ||| || |||||||||||||| | ||| || || || | || || |||| || || Sbjct 56270 AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGAT 56329 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 || | | ||| || | ||||| || || || || || || | ||| ||||| | Sbjct 56330 CTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACG 56389 Query 77209 TTCGTAAATAATAACCGA 77226 ||||| | ||| |||| Sbjct 56390 GTCGTAGACAATCGCCGA 56407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917851010240