Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 seq137 132 1e-25 seq126 111 4e-19 >seq1 Length=623116 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || || || | ||||| || || || Sbjct 264729 CAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCGGAT 264788 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 264789 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 264848 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||||||||| || || ||||| | || || ||||||| ||| | Sbjct 264849 CGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAACATT 264908 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 264909 CAGAAGGAGTCTACTTTGCA-CTTG 264932 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || |||||||| | || || || |||||| Sbjct 264957 CAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCAGAC 265016 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| ||||||||| Sbjct 265017 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAA 265076 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | || ||||| | || || ||||||| ||| || Sbjct 265077 CGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAACATC 265136 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 265137 CAGAAGGAGTCGACGCTGCA-CTTG 265160 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || ||||| |||||||| || ||| || |||||||| || ||||| Sbjct 264520 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 264579 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || |||||||| |||||||| || || || ||||| || | Sbjct 264580 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 264639 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || ||| || ||| ||||||| ||||| || || | Sbjct 264640 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 264699 Query 178123 ATCTTGT 178129 | || || Sbjct 264700 ACCTCGT 264706 >seq137 Length=159453 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 53143 CAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 53202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 53203 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 53262 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || | || || |||| || ||| || Sbjct 53263 CGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATC 53322 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 53323 CAGAAGGAGTCCACCCTCCACCTGGT 53348 >seq126 Length=166795 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || || ||||||||||| || ||| ||||| ||| Sbjct 82415 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 82474 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| || |||||||| || | Sbjct 82475 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 82534 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || || || | || || |||| || ||| |||| || Sbjct 82535 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 82593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203702559849258