Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq137 167 2e-36 seq126 127 2e-24 seq1 125 7e-24 seq29 87.8 2e-12 >seq137 Length=159453 Score = 167 bits (184), Expect = 2e-36 Identities = 178/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | |||||| || || ||| ||||||||| ||||| |||||| Sbjct 53369 CCACCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 53310 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| |||| |||||| ||||| | | Sbjct 53309 GACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGG 53250 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 53249 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACT 53192 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 53191 CCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 53139 >seq126 Length=166795 Score = 127 bits (140), Expect = 2e-24 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| |||| || |||||||| || ||||| | Sbjct 82595 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGA 82536 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 82535 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 82476 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 82475 CG--ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAAC 82418 Query 41851 GAA 41853 ||| Sbjct 82417 GAA 82415 >seq1 Length=623116 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| |||| || ||||||||||||||| || |||||| Sbjct 264952 CCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAG 264893 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || || || || |||||||| || || ||||| ||||| | ||| Sbjct 264892 AGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 264833 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | || || ||||| || Sbjct 264832 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGAC 264774 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| |||||||||||||| Sbjct 264773 CTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 264726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||| || ||||| |||||| | Sbjct 264724 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTG 264665 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 264664 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 264605 Query 41756 ACGCTCTCCTTGTCC 41770 | | |||||||||| Sbjct 264604 ATACCCTCCTTGTCC 264590 >seq29 Length=294672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| ||||| ||||| |||||| |||| || |||||| |||||||| ||| Sbjct 90555 CGCATCGCCCCTCGCTCCGGTCTCGCCTCCAAGAACTTCATCGACACCGGCGCCGGTGTC 90614 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAGAGGAT 85919 || ||||||||||||||||| | |||| | | || |||||||||| ||| | || Sbjct 90615 ATTGACGCCGACTACCGCGGCCAGGTCAAGGTTCTGCTGTTCAACCACGCCGATGCCGAC 90674 Query 85920 CTGGTCGTGAGGCGA-GGAGACAAGGTGGCCCAGTTCATC 85958 | | |||| ||| || ||| || |||||| ||||| Sbjct 90675 TTTGAGGTGA-ACGAGGGCGACCGCGTCGCCCAGCTCATC 90713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293268768400