Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq410 199 5e-46 >seq410 Length=292899 Score = 199 bits (220), Expect = 5e-46 Identities = 512/773 (66%), Gaps = 64/773 (8%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||||| || | | || |||| |||||| | | | ||||||||||| || | Sbjct 36095 CATCTTCATGGCAATCGTCTTATGCGGGTCGTAGCCTTTGACCACAAAGTCCTCCACCTT 36036 Query 145605 GAAGTCATCTATGTCCTCCACCC-GCCTCA--GG--ATCCTGAGCCTGGGAAAGGGCCGG 145659 | | || ||| || ||||| ||||| || ||| | | ||||||| | | Sbjct 36035 CCACCCGTCAATG--CTGCACCCTGCCTCCTTGGTCATCTCCAACAGGGGAAAGTCTCTG 35978 Query 145660 GGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTC 145718 || ||| | || | ||| | |||||| | |||||||||| ||| || ||||||||||| Sbjct 35977 GG-CTCGCGCTCCAACTGCACCTTCAGCGCGTCCACGTGGTCGAGATACACGTGCGCGTC 35919 Query 145719 CCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGT 145778 |||| |||||| | | | || || ||| | | | || | ||| | ||| Sbjct 35918 GCCCATGACGTGTGTCAGGCTTCCTGGAATAAGGTCGCACGCGCGCGCAATCATATGGGT 35859 Query 145779 CAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTG 145838 ||||| | ||| ||||| |||||||| ||||| ||||| |||||||| | |||||||| Sbjct 35858 GAGCAGCGCGTAACTGGCAATGTTGAATGGCACTCCCAGGCCCATGTCACAGGAGCGCTG 35799 Query 145839 GTACAGCTGGCAGGAGAG---------------CTCC-CCGCC----------------- 145865 ||||||||||||| | |||| ||||| Sbjct 35798 GTACAGCTGGCAGTGCAAATGTCCCTTCGGCTTCTCCTCCGCCGAAGCATTTCGCGATCT 35739 Query 145866 ------CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCA 145918 || ||||| ||||| ||| | | |||||||||||| || ||||| || Sbjct 35738 GGGGTACGAGACGTAAAACTGAGCAAAC-ATGTGGCAGGGCGGGAGCGCCATCTTCTTCA 35680 Query 145919 GGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGA 145975 ||||||| |||||||| ||| | || | || ||| || ||| |||||| |||||| Sbjct 35679 GGTCCGCGGGGTTCCACGCGCTCAGCAGGA---TCCGGCGGTCGTACGGGTTCGTCTTGA 35623 Query 145976 TCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGT 146035 | || | || || ||||| |||||||| ||| || || ||||||| || Sbjct 35622 GTTTTTGAATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTATAGTCCGTCTTGGCGT 35563 Query 146036 CCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGG 146095 | |||||| |||| |||||||||| ||| ||||| ||||| ||||| || || || ||| Sbjct 35562 CGACGTACTCGGCGCCGAAGTGCCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGA 35503 Query 146096 GCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 || | ||| || ||| | | | | || || || || || ||||| ||||||| | Sbjct 35502 CTTCGCGGTGGGAAAGGCCGACACTGTCAAGAAACTCGCGCGAGCCGTTTCCGTCCCAAA 35443 Query 146156 TCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC--CGTGGACCCCCTGATGAACCAG 146211 |||||| ||| |||||| || | || ||| | |||| ||| || ||||||| Sbjct 35442 TCTTGATGCCGGCCTCGCTCAG-GGGCA---GAGACGACGTGCTGCCCGCGACGAACCAG 35387 Query 146212 AGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 |||||||| ||| ||| | | | |||||| | || ||||| || ||||| Sbjct 35386 AGCAGCTCGGCGACGACGGCGCGCAGGAAGACGCGTTTTGTGGTGAGAAGGGG 35334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590067388275040