Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1073 179 4e-40 seq63 150 2e-31 seq663 114 1e-20 seq245 114 1e-20 >seq1073 Length=8604 Score = 179 bits (198), Expect = 4e-40 Identities = 211/285 (74%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||||||||| |||||||||| ||||||| | ||| || Sbjct 2194 ATTTGGCAAATGTACAAGAAGGCCGAGGCGTCATTCTGGACCGCCGAGGAGATTGACTTG 2253 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | || ||||| ||||| |||||| Sbjct 2254 TCCAAGGACCTTCACGACTGGAATAACAAGATTAACGACGACGAGAAGTTCTTCATCTCT 2313 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||| ||| ||||| || ||||||||||| ||||| || || Sbjct 2314 CACATCCTCGCCTTCTTCGCTGCCTCGGACGGTATTGTCAACGAGAACCTGGTTGAACGC 2373 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||||| |||||||||| |||||||||||||| |||||| ||| Sbjct 2374 TTCAGCGGTGAAGTCCAGGTCCCCGAGGCGCGTTGCTTCTACGGCTTCCAGATCATGATG 2433 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || ||| | ||||| || | ||||| |||||||| |||||| Sbjct 2434 GAAAACATCCACTCCGAGACCTATTCTCTTCTCATCGATACGTAC 2478 Score = 176 bits (194), Expect = 5e-39 Identities = 273/385 (71%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| || |||||| || | ||| || || | |||| |||| Sbjct 2599 AGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGA-AGTCCACTTTCGCTCAGCGT 2657 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || |||||||| || || |||||| ||||||| || || || || |||| ||| Sbjct 2658 CTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGGTGCCTTTGCGTCCATCTTT 2717 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || |||||||| |||||||| ||| ||| || |||||||| | Sbjct 2718 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCTCCAATGAACTCATCTCTCGC 2777 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 ||||| || ||||| ||| |||||||| |||| | | || || ||| || || Sbjct 2778 GACGAAGGACTGCACACCGATTTTGCCTGCCTGCTCTACTCCCACCTGAAGCACCGCCCC 2837 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | || |||| ||| | |||||| ||| || |||||| |||||| Sbjct 2838 AGCAAGCAGGTCATCCGGGACATCATTGTCGACGCCGTCAAGATTGAGCAGGAGTTCCTC 2897 Query 117281 ACCGAAGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| ||| |||| || || | |||| | | ||| ||| ||||| Sbjct 2898 ACCGAGGCTCTGCC-CTGCGGTCTCCTCGGGATGAATTCCAACCTCATGAAGCAGTACAT 2956 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTG 117364 || || || |||||| | |||||| Sbjct 2957 TGAATTTGTGGCCGACCGTCTGCTG 2981 >seq63 Length=145700 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 39373 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 39432 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 39433 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 39492 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| |||||||| |||||||||| Sbjct 39493 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 39552 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| |||| || || || ||| ||||| || | || || ||| Sbjct 39553 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGC 39603 >seq663 Length=189090 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| |||| || || || | |||| | Sbjct 17421 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 17480 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 17481 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 17540 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 17541 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 17600 Query 40879 G 40879 | Sbjct 17601 G 17601 >seq245 Length=397273 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| || ||||| | || ||||| | | Sbjct 356440 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 356381 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| |||||||| || | |||||| Sbjct 356380 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 356321 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| ||| |||| || | || ||||| ||| |||||| Sbjct 356320 CAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAAC 356261 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 356260 ATCCAGAAGGAGTCGACGCTGCA 356238 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| || || |||||||| |||| || || || |||| | | | | | ||||| Sbjct 356874 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 356815 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| ||||| ||||| | |||||||| || || || | ||| |||| Sbjct 356814 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 356755 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | |||||||||| ||||||||||||||| ||||| |||| || | Sbjct 356754 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 356695 Query 40892 ATCTAGT 40898 | || || Sbjct 356694 ACCTCGT 356688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210982253760