Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq245 165 7e-36
seq63 107 2e-18
seq663 89.7 4e-13
seq164 84.2 2e-11
>seq245
Length=397273
Score = 165 bits (182), Expect = 7e-36
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| | | | ||||||||| | |||||||| || |||||||||||||||
Sbjct 356440 TACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGG 356499
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||||| |||||| || |||||||| ||| |||||||||||||||| || ||||
Sbjct 356500 AGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAG 356559
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||||||||| ||| || || || | |||| ||| |||| |||||
Sbjct 356560 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGA 356619
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || |||||||||||||| || || |||||||||||
Sbjct 356620 CCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||||||| | || || ||||||
Sbjct 356231 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCCTC 356290
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| || |||||| |||| ||||| ||||| || ||||| ||||||||||||||
Sbjct 356291 CAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 356350
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | |||||| || | || | ||| ||
Sbjct 356351 GATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTCTT 356410
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || ||||| |||||
Sbjct 356411 GCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || || || ||||| |||||||| ||||| | ||||| |||||| |||||
Sbjct 356693 GTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCAAGCTG 356752
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| |||||| | || || |||||||| |||||||| || ||||||||||| ||| ||
Sbjct 356753 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 356812
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||| || | | ||| ||||||| || | || || |||||
Sbjct 356813 GGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCGGT 356872
>seq63
Length=145700
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||||| || ||||| || || |||||||| ||| || ||||| ||
Sbjct 39585 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 39526
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| ||||| || || ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct 39525 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 39466
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| | ||| ||||| | ||| | ||
Sbjct 39465 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 39406
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || || || |||||||||
Sbjct 39405 CTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 39372
>seq663
Length=189090
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| ||||| ||||| || |||||| ||||
Sbjct 17599 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 17540
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| ||||| || |||||||||||||| || || || || | |||
Sbjct 17539 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 17480
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||||| | ||| ||||||| ||| | || || || ||||| || || || ||
Sbjct 17479 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 17421
>seq164
Length=162670
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283
||||| || || |||||||| ||||||||||| | | || | || || ||| | |||
Sbjct 46305 TTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGT 46246
Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343
||||| | ||||||||||| || ||||||| || | || ||||||||| || ||
Sbjct 46245 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACG 46186
Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCAC-TGCAATTCGTTCCAGTCCCA 133402
| || | ||| | ||||||| || || || ||| | | ||| || |||||||||
Sbjct 46185 AGCAGACTGTTGCGGACGCCGTGCTGCTTGAT-CTGCTCTTTCAAAGAGTCCCAGTCCCA 46127
Query 133403 CAG 133405
||
Sbjct 46126 GAG 46124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433823653394992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |