Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq164 138 2e-27 seq444 107 4e-18 seq391 95.1 3e-14 >seq164 Length=162670 Score = 138 bits (152), Expect = 2e-27 Identities = 610/951 (64%), Gaps = 26/951 (3%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 ||||||| ||||| | || || | ||| | | ||| | ||||| || |||||| Sbjct 44789 GCGATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGACCTTGGAGAGG 44848 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 ||||| |||||||| || ||||||||||| | || | || |||||| | ||||| Sbjct 44849 TCGTACCTCCTCAAGATCGATGGCAAGATTGCCGAGAGGCCGCAACACATGATTATGCGT 44908 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967 || ||||| || ||| || ||||| | ||| |||| |||||||||||| | Sbjct 44909 GTCGCTGTTGGCATT---TGGGGTGACAACGTTGAGCGCGTTATCGAGACGTACAACTTG 44965 Query 248968 ATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA 249026 ||| | | | ||| | | || |||||| | || || || ||||||||||| ||| | Sbjct 44966 ATGTCGAGCAAGCT-GTTCACCCATGCCTCGCCCACTCTGTTCAACGCCGGCACCCCTCA 45024 Query 249027 CAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTA 249086 || ||| |||||||| || | | ||| | || ||||| |||| ||||| || Sbjct 45025 GGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCCATCGAAGGCATCTA 45084 Query 249087 TGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTC 249143 ||||| || | ||||| || | |||||| || | || || || ||||||||| Sbjct 45085 CGACACCCTCA---AGACGTGCGCCATGATTTCCAAGATGGCTGGAGGCATCGGTCTCAA 45141 Query 249144 CGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203 |||| ||| || | | || || |||||| || || || || | | || Sbjct 45142 CGTCCATCGCATTCGTTCCACTGGCTCCTACATCGCGGGCACCAACGGAACCTCCAACGG 45201 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263 | |||| || | || || ||| | |||||| | | || |||| | ||| Sbjct 45202 TGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCGACCAAGGCGGTAA 45261 Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320 | ||| || | |||||||| || | || |||||||||||| | || ||||| Sbjct 45262 CAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTT 45321 Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380 ||| || | |||||| ||||||| ||| | | || || || || ||| || Sbjct 45322 CCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGCGATCTTTTCCTCGC 45381 Query 249381 CCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT 249440 ||| ||| || | || | |||||| | ||| || |||| || ||||| || | Sbjct 45382 CCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGTGACTGGACTCTCAT 45441 Query 249441 TTCTCCGTCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCT 249499 | ||| ||| || |||| |||| ||| |||||| || || || | Sbjct 45442 GTGTCCCAACGAGTGCTCCGG-CCTCGCCGACTGTTACGGCGAGGAGTTTGAGGCGTTGT 45500 Query 249500 ATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT-TTTT 249555 | |||| ||||| | | || | | ||||||| |||||||| | || || | | Sbjct 45501 ACGAGAAGTACGAGCGCGAGGGTAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGT 45560 Query 249556 GCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGC 249614 || | | ||| | |||| ||||| ||| || | || ||| ||| ||||| Sbjct 45561 ACG-CCATCCTTGAGGCGCAGACGGAGAC-GGGCAACCCCTTCATGCTGTACAAGGACGC 45618 Query 249615 GTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC 249674 |||| |||||| ||||| | | || |||||||||||| || || || || | Sbjct 45619 CGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAACCTTTGCAC 45678 Query 249675 AGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || | || | |||||| | || ||| ||||||||||||||||||| Sbjct 45679 TGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGC 45729 >seq444 Length=140277 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 |||||| || |||||| || | || || |||||||||||| ||||||| || ||||| Sbjct 20860 CTGTCCACCCTTCAAGATCATCATTCTTGACGAGGCGGACTCCATGACCCAGGATGCGCA 20919 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | |||||||||||| || |||||||| || | | || || || || || | || Sbjct 20920 GAGCGCCCTCCGCCGGACAATGGAGACTTACAGCAAAATCACCCGCTTCTGTCTCATCTG 20979 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||| || || |||||||| |||||| || ||| ||| |||||| || |||| Sbjct 20980 CAACTATGTCACGCGGATCATCGACCCGCTCGCCAGTCGTTGCAGCAAGTTCCGCTTCA 21038 >seq391 Length=192253 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| | || || |||| || || || || || |||||||| || |||||||| Sbjct 147416 CTACCCCATCTCCTCCTCTACGGGCCCCCGGGCACGGGAAAGACGTCCACGATCCTGGCC 147475 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || ||| | | |||| | |||||| || | || |||||||| |||||| Sbjct 147476 CTCGCGAGAAGAATCTACGGCGCTGAAAACATGCGACAAATGGTCCTCGAGCTCAACGCT 147535 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | ||||| || ||||| ||||||||||||| Sbjct 147536 TCCGACGACCGCGGCATCGACGTGGTGCGCGAGCAGATCAAGACTTT 147582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073748845261568